RNA id: XM_022669293.1


Basic Information

Item Value
RNA id XM_022669293.1
length 5698
RNA type mRNA
GC content 0.57
exon number 49
gene id LOC103043248
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19249148 ~ 19277687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGCGTTTAGGCAGTAGGGACGTATCCGCTCGGGTCTGGAttttgcgcacacacacacccacaggcCGGACCCAGCGTGCATGAGTGGAGCTAACCCGGGCTGCCCCCTTGCCTCAAAGAGTCTACATGTCTAACGTTTAGACATGTTCAGCTTTGTGGATGTTCGGTTAGGGCTGCTGCTCGCAGCAACAGCCCTCTTGGTGAGAGGACAAGGCGAGGATGATAGCCTGTTCGGTAGCTGTACGCTAGAAGGCCAGTCGTACAATGACAAGGATGTATGGAAACCTGAGCCCTGCCGGATTTGCGTCTGCGACAGCGGGACGGTCATGTGCGACGAGGTGATCTGCGAGGACACATCCGACTGTGCCAATCCAGAGATCCCCGATGGAGAATGCTGCCCTATCTGCCTCGACGaCGGACAAACCACAGACCCAATAATCCCGGTTGGACCCGTAGGACCAGTTGGACCTAACGGTGACCCGGGTCTCGAAGGTCTTCCTGGTAATGACGGCATCCCCGGACAGCCTGGACTTCCCGGACCTCCTGGCCCCCCTGGACCCCCTGGCCTTGGCGGAGGTTACCTGCCCCAGATCTCTTACGGCAGTGAGAAGTCCAGTGGCCCACCTGTCCCAGGACCCCCTGGCCCAATGGGTCCCCGTGGACCTCCCGGATCTGCAGGTTCTCCTGGTCCTCAAGGATTCACTGGTCCCCCTGGCGAGCCTGGTGAGCCTGGTGCATCTGGTCCCATGGGTCCTCGTGGCCCCAATGGTCCTCCTGGAAAGAACGGAGATGATGGTGAGGCTGGAAAAGCTGGTCGTCCTGGTGAGCGTGGAGCCGCTGGTCCTCAGgGAGCTCGTGGATTCCCCGGAACCCCTGGACTGCCCGGCATCAAGGGACACAGAGGTTTCCCAGGTCTAGATGGAGCCAAGGGAGATGCTGGTATTGCCGGACCCAAGGGAGAGGCTGGTTCACCTGGTGAGAACGGAGTTGCTGGTGCTATGGGTCCTCGTGGTCTGCCCGGTGAGAGAGGCCGTCCTGGACCTCCTGGCCCCTCTGGTGCTCGTGGTAACGATGGAAACTCTGGACCTGCTGGACCTCCTGGACCCACTGGCCCTTCTGGTCCCCCGGGATTCCCAGGTGGTGCTGGAGCTAAGGGAGAGACTGGCCCCGCTGGAGGACGTGGATCTGAGGGACCCCAGGGATCCCGTGGAGAGCCTGGTAACCCCGGacctgctggagctgctggtgctgctGGTCCTCCTGGTGCTGATGGTTCTCCTGGTGCCAAAGGATCTTCTgGTGCCGCTGGTATTGCTGGTGCTCCTGGTTTCCCTGGTGCTCGTGGACCTGCTGgaggtgctggagctgcaggTGCCCCTGGACCCAAGGGTAACACTGGTGATGCTGGAGCCCAAGGAGCCAAAGGAGAGCCCGGTCCTAAGGGAGAGTctGGCCCCGCTGGACCTCAGGGTCTTTCTGGACCTTCTGGTGAGGAGGGTAAGAGAGGTGCCCGTGGTGAGCCTGGTGGTGCTGGACCTCTTGGACCTCCTGGAGCTCGTGGCGCCCCCGGCAACCGTGGTTTCCCAGGAACCGATGGAGCTCCAGGCCCCAAGGGAGCCCCTGGTGAGCGCGGACCTAATGGACCTGCTGGATCTCAGGGAGCCACCGGAGAGCCTGGTCGCCCTGGAGAGCCTGGACTGCCTGGATCTAAGGGTATGACTGGTGCTCCTGGTTCTCCTGGACCTGATGGCAAGACTGGACCTACTGGTGCTCCTGGTCAGGATGGTGCAAGTGGACCCCCAGGACCTGCTGGATCTCGTGGTACCCCCGGAGTGATGGGATTCCCCGGACCTAAGGGAGCTGATGGTGAGAGTGGAAAGCCTGGTGAGAGAGGCGTCACTGGACCTACTGGTTCTGTTGGTGCCCCCGGCAAAGACGGTGATGTTGGTGCTCCTGGTGCTCCCGGACCTGCTGGACCTGCTGGAGAGAAGGGTGAGCAGGGAGGTGCTGGACCTTCTGGATTCCAGGGTCTGCCTGGAACTCAGGGTGCTACTGGTGAGGCTGGCAAGCCTGGTGAGCAGGGTCTGCCTGGTGAAGCTGGTGTTCCTGGACCTTCTGGCCCCAGAGGTGACAGAGGTCTGCCCGGTGAGCGCGGTGCCCCCGGCCCTGCTGGCCCCATTGGAGCTCGTGGTTCTACTGGACCTGCTGGTAACGACGGTGCTAGAGGAGAGcctggtgctgctggagctcctggTGGTGTTGGTCCCGCTGGTATGCAGGGAATGCCTGGAGAGCGTGGTGCTGGTGGTATGCCTGGAGCCAgaggagacagaGGTGATGCTGGACCCAAGGGCCCTGATGGTGCTGTTGGTAAGGATGGCGCCCGTGGCCCTGCTGGCGCCATTGGAGCCCCTGGACCCTCTGGTGCTCCTGGTGACAAGGGAGAGCCTGGTCCCGTTGGAACTGCCGGAGTAACTGGACCTCGTGGTTCTGCTGGTGAGCGTGGTGAGGTTGGTCCTCCTGGACCTGCTGGATTCGCTGGACCTCCTGGTGCTGCTGGTTTCCCTGGTGCTGCTGGTAGAGTTGGACCCCCTGGCCCCGCTGGTGCAGGCGGACCCCCTGGACCCACCGGACCTGCTGGCAAAGAGGGACAGAGAGGAGCTCGTGGTGAGAAGGGTGCACCCGGCCGTCCTGGTGAGATCGGAGGTGCTGGACCTCCCGGACCCCCCGGAGACAAGGGTTCCCCTGGCTCTGATGGAGCTCCAGGCCCCTCTGGTACTTCTGGACCTGCTGGTATGGCTGGAGCTAATGGTCTTGTGGGTCTGCCtggacagagaggagagagaggctTCTCAGGTCTTCCAGGACCTTCTGGAGAACCAGGAAAGCAGGGTGGCCCCGGAGCTGTTGGTGAACGTGGACCTCCTGGACCAATGGGACCTCCTGGACTGAGTGGAGCTACTGGTGAGGCTGGACGTGAGGGTAGCCCTGGTCATGATGGTGCTCCTGGTCGCGATGGCGCTCCTGGACCCAAGGGAGACCGTGGTGAGGCTGGACATGTTGGTGCTCCTGGAGCTCCCGGACCCCCTGGACCTCCCGGCCCCCTGGGTCCATCTGGAAAGACTGGTGATCGTGGAGAGGCTgGTCCTGCTGGCTCTGCTGGTCCTGCTGGTCCTGCTGGTGTTCGTGGTCCTTCTGGCCCTGCTGGTCCTCGTGGAGACAGAGGTGAGGCTGGAGAGACTGGAGACAGAGGCATGAAGGGACACCGTGGTCTCAGCGGCATGGCTGGACTCCCTGGACCCCCTGGCCCCCCTGGTGAGCACGGACCTGCTGGACCCACTGGCCCCGCTGGACCTCGTGGAGCCTCTGGCTCAAGCGGCCCCCCTGGTAAGGATGGAGTGAGTGGAATGCCTGGACCTGTTGGACCTCCTGGACCCCGTGGTCGTACTGGAGAGATGGGATCTGCTGGTGCTCCTGGTCTTCCCGGACCCCCAGGTCCTCCCGGACCTCCCGGTGTGGGCGAGCCCTTCCCCATCATGCCCCAGCAGGAGAAGGCCGCCGATCCCCTGCGCAGCTACAGAGCCGATGACGCCAGCGTGCGCGACCGCGACTCCGAGGTCGACACCACCCTCAAGTCCCTTAGCCAGAAGATTGAGAACATCCGCAGCCCCGAGGGAACCCAGAAGAACCCTGCCCGCATGTGCCGTGACCTCAGAATGTGCCACCCCGAATGGAAGAGCGGCTCCTACTTCGTGGACCCCAACCAGGGCTCTCCTCTGGACGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTACAGCCAACCCGTGGCAGCGTTCCTCTGAAGAACTGGTACCTCAGCAAGAACTTCCGCGAGAAGAAGCACATCTGGTTCGGAGAGTCCATGCCCGAGGGCTTCCAGTTCCAGTATGGCAGCGAGGGCTCTGATCCTGAGGATGTGAACATCCAGATGACCTTCATGCGCCTGATGTCCAACAAGGCGTCCCAGAACATCACCTACCACTGCAAGAACAGCATCGCCTACATGGACCAGGCCTCTGGCAACCTGAAGAAGGCTCTGCTCCTGCAGGGATCCAACGATGTGGAGATCAGGGCCGAGGGCAACAGCCGCTCCACCTACACAGTCAGCGAGGATGGCTGCACGtcacacactggCACATGGGGCAAGACAGTCATCGAGTATCAGACAGCGAAAACAACTCGCCTCCCCATCATTGACATCGCTCCTATGGACATTGGTGCTCCCGATCAGGAATTCGGTGTAGAAGTTGGCGCAGTCTGCTtcttgtaaaaacaaaaatctggacattaaaaaaaatgttgttttatttctaatGGTCATCTCCGAGTCTTTTTCTATGCATTAAACCCCCCCAAACAACTGTCATTCGGCTGCAGTCGGTCCACTGCTTACACTCGCGTCTGTGAGGATTGTGCTCGTTTCGTGATCTTGAGAGACATtctgcttttttctctttttttgaaaatgttttttgaggACCACTATGCCATCCAGCGTCAACATCACGGACACTTAGGGAGAATGATTTTTGGGTCACCTGGCAacaagaaaataatatataactgTGCTTGTAAGGTGTAAAATCACACACATCCCCCCCACCTTCTCAAAAAAACTGAGAAGAACCCAAACGGTAATGAAAATACTGGTgaatttttttgccttttttttaccaCTGCAGAAggacaatgaaaaaaacaactacGCTACGTGCTAATGTACCATTCTCTGGTGTTgaataaatctgaaaaatgaCCGTCAATTGTCTTGTTCTTCTAGCCAAGAAAGGGAAAGCATTGTGTGACATAAAACCAAAGGAAAAACTTGTAATGGCTACCTCAGAACAACCCAAAAAATCACCCAAAATACCTGTTGTGGGGTTTTTCGGGGGACTCCTTCCACGCCACACatactagctaactagctaactagcaaaACAAGTGAAAACAAGTGCTTGCTATAGCTGGCTAGCTAGAACACAAGTAACAGTCAGAAAAAAGGTGCTAATTTCCTGTGCAGGTCCTGACTGTGGTGTATATTGTGTCTGACACTCCTCTTActcattttctgtctttttttactGTCACTTGTGCTTTTGGGACCTGTTTGGTGCTAACTGTCAACTCGATGTCTTGTTGTCAATGTGATTCCTTTTTCCCATTAAAGTGTCAGCTGAGGGGAATAAAAAGCTGAATGTGACGGTTGCTTAAGATTTGCACTTAATCTGACGTGAGTTAAGTACGTGGACAGTTTGCCATTTTCTTATCCAAGGCTTTGCCCCGCCCCCTGCCCCCAACTGTTCATTCCCTCCACACACTCATACTGCAAAACTGCAATGCACACCTCCTttcatttttgcttttatttttattttttgttttttttgttttctttattttctaagaaaaaaaaaatgaaatgaggcggcacatgagaaaaaaagaccaaaaaccCACAAACGAGACACTTTAATGGTTTCAACCAGAGGATCTGTACTTATTTTGTACATGTATAATATTTcaagatgtttttaattattttggatGCTGAAATAAAGCATGTTTTAAGTGGTCACCTGAATGTTCGGCATGTTATCTTCTCGACCCCCACCGTTAAATTAAACGATCTATACTGCTTTCACTCA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50894 lncRNA upstream 34330 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 285112 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 436197 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 541420 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 541467 18645635 ~ 18707681 (+) False LOC103022762
TU50915 lncRNA downstream 64412 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 196935 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 211274 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 379818 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 425561 19703248 ~ 19739691 (+) True G37861
XM_007233558.3 mRNA upstream 66901 19170742 ~ 19182247 (+) True LOC103037098
XM_022669291.1 mRNA upstream 80066 19161544 ~ 19169082 (+) True LOC103042924
XM_022669288.1 mRNA upstream 334592 18898912 ~ 18914556 (+) True LOC103023686
XM_022669289.1 mRNA upstream 334592 18898912 ~ 18914556 (+) False LOC103023686
XM_015605677.2 mRNA upstream 353297 18883895 ~ 18895851 (+) True LOC103036574
XM_022669295.1 mRNA downstream 15917 19293604 ~ 19311143 (+) True rfng
XM_022669297.1 mRNA downstream 40025 19317712 ~ 19328823 (+) False dcxr
XM_022669296.1 mRNA downstream 40091 19317778 ~ 19328823 (+) True dcxr
XM_022669302.1 mRNA downstream 84134 19361821 ~ 19385854 (+) True LOC103044175
XM_022669303.1 mRNA downstream 113755 19391442 ~ 19418752 (+) True fam20a
trnag-ccc other upstream 351776 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 872803 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 872803 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1135222 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 1156237 18084916 ~ 18092911 (+) False LOC103046566
TU50913 other downstream 51681 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 203369 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 880193 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1741482 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1888881 21166568 ~ 21295290 (+) False plce1

Expression Profile