RNA id: XM_022669295.1


Basic Information

Item Value
RNA id XM_022669295.1
length 2364
RNA type mRNA
GC content 0.49
exon number 10
gene id rfng
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19293604 ~ 19311143 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACTTGCTCTGCAGCCAAATGGCTTGGCTTtgtacagagaaacagaaacagaggtcATTTATCGCAGCGGAGAGcgatgtgtgtgtgggaggcaGTCAGTGGAGGGTGTTGTGCTTTGTTAACAGTATTTCTGGAGGGGATAAATCGGTGGAAACAGTGATATAACGGCGGACAGTGGCGGTAACGGAGCGATAGAGATATTTATCTGCCTTTAGTTTAACCAacaacaccagcagcagcagcagagctgcgGACTGAGGAGACTCTGGACAATAACAGTCGGATTTTAAGCGTTTTATAGTTTTTCAGGTTGACCCGGAGAACTTTAAAGGGACTTTAGAGGGACATTTCATTTACtgtttggagtttttttttctgttttgtatttaaCTAAGTTACGTGTTTAAAGTGAAGAGGATGAAGACAGAGGTGCTCCAAGAACACAATCCAGCTCCTCCACATCTGCTCTCCTGCGGGTCTGTCTCGTTGCATTAAAGATGGGTACTGGAGGAAAGCAGTGGCCAAGCCCGGGAGGCTGAGCTGGCACTGCACACAGGAAGAATGCACCTGTCGCCCGTTGGCATCAGTAAACGCTGCTTCCTGCTCTCCCTGGCCCTCTCTGCCCTGCTGCTCCTGCTGATCCTCACCCTGCAAACATCTCAGCGCCAGGGGGAGCTCCCCCAGCCTCGCCCCCCTGCCAGGCCCGCCGGAGCAGGGAGTGGACATGGACTCCAGAGCACCCACAATGCCACTTGGCACAAAGGTGCCGGTAATGCCAAGGATTCCAGCGTCACCCGGCCGCCCCCTGCTATGGCTGGACCCCAGGGGCGGCTGAGGTCACAGGACAGGAACATGGCACATGCTAAATCGCCTGGCTCTCGCTCCAGAGAGCCTCTAGAGCTAAAGGACATTTTTATCGCTGTTAAGACCACCAGAAAGTATCACAAGTCACGGCTGCAGCTGCTCTTTCAGACCTGGGTGGCAGAGGCCAAGGAGCAGACGTTTATCTTCACGGATGGAGAGGATAAAGAGCTGAAGAGGAAAGCAGGTGGCAACGTCATCAACACCAACTGCTCCGCCGCCCACACCCGCCAGGCCCTGTGCTGTAAGATGTCTGTGGAGTACGACAAGTTCATCGAGTCACAGAAAAAATGGTTTTGTCACGTGGATGATGACAACTACATAATCCTCCCTAGTCTCCTGCAGCTGCTGTCCTCCTACTCCCATACGCAGGACGTGTATCTGGGCCGGCCCAGCCTGGACCACCCTATAGAGGCTGCAGAGAGGGTCAAGAGCGACGGAACGGTGTCAGTAAAGTTCTGGTTTGCCACTGGAGGTGCTGGATTCTGCATCAGCCGAGGCCTGGCGCTCAAGATGAGTCCATGGGCAAGTCTGGGGAACTTCATCACTACTGCAGAGAAGATACGTCTCCCTGATGACTGCACCATCGGTTATATCATCGAGGCCTTGCTGGAGGTTCCTCTGACGCATACACGGCTCTTCCACTCCCACCTGGAGAACCTGCAGAGGCTGCCCACTGATAACGTCCTCCAACAGGTGACCCTCAGCTACGGTGGCTTTGAGAACAGGAGGAATGTGGTCAGCATCGCAGGAGATTTCTCTTTGGCTGAAGATCCTTCTCGGTTTAAGACTGTCCACTGCTTGCTTTACCCTGAGACTCCCTGGTGTCCCCACAACGTCCGTCACTGACATCAGCACACACTCCTGTATACAGAGCGAAGGCAGACTGGACCTTCTATCTCCTCTGAACACTTGCAAAAAAAAGGGCTGCTCCTGTGCATTAAAGCGATACTTCAGTGTTTTTCACTACAGTCTCTCCAAGCCGCACCTTTAGTGGAAGAGCAGTGACCACTTTAAAGGTTTATATGAAATCAGTATTAatttaggctatgttcacacagcaggtagaAAAGTGTCCCAAAtccaatcatttttaattataatatgtATGACACATATATGTATGGTGCATATGGCACAATACATGGTATTGAAAGTCTAAACATATTGGATTTGCAGCAATGCGATTTTTTTCTGAACAACCagattagaatattttttttaatttacgtCCTGGAGAAGAGAAAATGGACGACAGCAGTGAATGAGGATTTAAGTGGAAGGATGGCAACTTTTATAACAGGTAACAGaccttataaatatatatttgggtCTGATGTctctgttttaataatattaaaaggcCTGTCTTGCAACAACtcagtgtttttaaagaaatagcCAAATAGCTTATAAAGTTTAGCCCCATAACAGaccaggatttttgtcagttgtctgcctgacattacaccactaaatcttgaggatttctattcaagca

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0035284 brain segmentation biological_process
GO:0021592 fourth ventricle development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50894 lncRNA upstream 78786 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 329568 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 480653 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 585876 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 585923 18645635 ~ 18707681 (+) False LOC103022762
TU50915 lncRNA downstream 30956 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 163479 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 177818 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 346362 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 392105 19703248 ~ 19739691 (+) True G37861
XM_022669292.1 mRNA upstream 15917 19249148 ~ 19277687 (+) True LOC103043248
XM_022669293.1 mRNA upstream 15917 19249148 ~ 19277687 (+) False LOC103043248
XM_007233558.3 mRNA upstream 111357 19170742 ~ 19182247 (+) True LOC103037098
XM_022669291.1 mRNA upstream 124522 19161544 ~ 19169082 (+) True LOC103042924
XM_022669288.1 mRNA upstream 379048 18898912 ~ 18914556 (+) True LOC103023686
XM_022669297.1 mRNA downstream 6569 19317712 ~ 19328823 (+) False dcxr
XM_022669296.1 mRNA downstream 6635 19317778 ~ 19328823 (+) True dcxr
XM_022669302.1 mRNA downstream 50678 19361821 ~ 19385854 (+) True LOC103044175
XM_022669303.1 mRNA downstream 80299 19391442 ~ 19418752 (+) True fam20a
XM_022669306.1 mRNA downstream 125218 19436361 ~ 19452589 (+) False LOC103038698
trnag-ccc other upstream 396232 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 917259 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 917259 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1179678 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 1200693 18084916 ~ 18092911 (+) False LOC103046566
TU50913 other downstream 18225 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 169913 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 846737 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1708026 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1855425 21166568 ~ 21295290 (+) False plce1

Expression Profile