RNA id: XM_022669296.1


Basic Information

Item Value
RNA id XM_022669296.1
length 1016
RNA type mRNA
GC content 0.52
exon number 8
gene id dcxr
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19317712 ~ 19328823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTTTGCTCTGTCAGCTGCAGCCCCGCTCAGAGCAGAAGGTAGGAAAGTAACACAGAGCTGCTATAAACCCTTATCTTCTTCCTGAACAGCGACAttactgcactttcctctgattATCACTGTTATAACAGTGTGAACACAAATTCCCGCTGTGTTTCAGCCCGCGCCGTTAACACTAGCCTCACGCGATGGAGATCACTTTCACGGGAAAGCGCGCGCTGGTGACCGGAGCGGGGAAAGGTATCGGCCGGGCCACCGCCCTCGCTCTGGCACGCGGCGGCGCTGAGGTCACCGCGGTCACGCGCACCAAGGCAGACTTGGAGAGTCTCGTGCAGGAGTGTCCTTCCATCAATCCGGTGTGTGTGGACCTCGCAAACTGGGGAGCTACAGAGACCGCACTGAAGAATGTAGGACCTATTGATCTGCTGGTGAACAATGCAGGCTGTGCTAAACTGCAGTCCTTCTTTGAGATCACAGAGGACGAGTTTGACATATCTTTCAATGTGAATGTGAAAGCAGCGCTGCACGTCGCACAAATCGTGGGGAGAGGAATGAAGGCCCGGGGTCGAGGCGGCTCCATCGTGAACGTGTCCAGCCAGGCTGCTCAGTGTGCCGTTAAAGATCACGCGGTTTACTgtGCCACCAAAGGAGCTCTCGACATGCTGACCCGAGTAATGGCTCTGGAGCTGGGGCCGCACCAGATTCGAGTGAACTCTGTGAACCCAACAGTGGTGATGACGGATATGGGTAAAATAGGATGGAGTGATCCGGTGAAGGCCAAGACCATGATGTCTCGTATCCCACTGGGCAAATTTGCCGAAGTGGAAGATGTGGTCAACTCCATTCTGTTTCTTCTGAGCGACAAGAGCGCCATGACCAATGGCGTGACCCTGCCTATAGATGGAGGCTTCCTGGCCTGCTAGATCTGCAGATCTTCACAAATTACTCTGTAAAACGTGGGAATTCTGAagggaaatataaaaaaaactgaataaaaagacTTGTTTAGTGTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K03331 DCXR; L-xylulose reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50894 lncRNA upstream 102960 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 353742 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 504827 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 610050 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 610097 18645635 ~ 18707681 (+) False LOC103022762
TU50915 lncRNA downstream 13276 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 145799 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 160138 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 328682 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 374425 19703248 ~ 19739691 (+) True G37861
XM_022669295.1 mRNA upstream 6635 19293604 ~ 19311143 (+) True rfng
XM_022669292.1 mRNA upstream 40091 19249148 ~ 19277687 (+) True LOC103043248
XM_022669293.1 mRNA upstream 40091 19249148 ~ 19277687 (+) False LOC103043248
XM_007233558.3 mRNA upstream 135531 19170742 ~ 19182247 (+) True LOC103037098
XM_022669291.1 mRNA upstream 148696 19161544 ~ 19169082 (+) True LOC103042924
XM_022669302.1 mRNA downstream 32998 19361821 ~ 19385854 (+) True LOC103044175
XM_022669303.1 mRNA downstream 62619 19391442 ~ 19418752 (+) True fam20a
XM_022669306.1 mRNA downstream 107538 19436361 ~ 19452589 (+) False LOC103038698
XM_022669305.1 mRNA downstream 109221 19438044 ~ 19452589 (+) False LOC103038698
XM_007233563.3 mRNA downstream 109221 19438044 ~ 19452589 (+) False LOC103038698
trnag-ccc other upstream 420406 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 941433 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 941433 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1203852 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 1224867 18084916 ~ 18092911 (+) False LOC103046566
TU50913 other downstream 545 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 152233 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 829057 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1690346 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1837745 21166568 ~ 21295290 (+) False plce1

Expression Profile