RNA id: XM_022669302.1


Basic Information

Item Value
RNA id XM_022669302.1
length 2450
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103044175
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19361821 ~ 19385854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGAGAGGAGCTGTGAACTTGCTGTGGTTCCTGCAGCCTCACAAAGGCCTGTTTGAGACTCGTTCCAACCAGTGTGAACCCCACCAAGTGTTTCTACCAGACATCTGCGGCCAGAACTCTCTGGTCTCTTACCAACAAAGCCCAAAACTCCACAGTGAACCAATCAACAGAATCAGATATGAGCCTGAAGCTGAACTCATCATTACGTCATCagagagtgagagcagctcATTGGTCATTGTGGACATGAAGCACAGGAGGGAAAGTTACATTTGGAAAATTGAGAAGGGAATCCTGTGTTTTGATATCAGCTGGTCTCTGGGTCTGCTGGTGACCGCAGGGCTGGACCCGGCTCTCAGGATATGGAACCGCTACGTTACCTCTCGACCTGCTGCTGTGCTACATGGTCACAGGACTACAGTGGTGGACGTGGTTATCCACCAAACTCTGGACAAGATCTTCAGCTATTCAAAAGATGCTGTCCTGAAGATGTGGGACATCTGTTCTCAGCAGTGTGTGAAGACCCTGTCTCTGAGGTTCcccaacattcagcctgcatgTTTCCCGGAGCAGGGCAGCTTCCCACTGCTGCTCAGCCTGGCTGCAGCTCCTGCACTGCTGATCAGCTGCAGGGaatatctgtctctgctgagactgCAGAATCCAACCTCCAACTGCAGACCCTCAACCTTCTCCTGCACACTGTACATCCCCAAACTCAAACAGgtaGTGACAGCTTGTGCTAAATCCTCTGTGGTGGTGTGGGACGTGAACACAGGCAGAAAGTGCATGGAGCTGAATAACGCACACGGTCAGGAGGAGATCACAGCCATGACAGCAGACCCCAGCCAGCGCCGGCTCATCACTGCAGCTTCCAACGGCACCATCAAGgtGTGGAGCTTGCAGAACGGCCGTCCGCTCCACAAACTGGAGGCCGTGTCGGACGCAGAGGTCACAGGGGTTATCTGTCTCCATGACGACCAGCTGCTGGCCGTGGGCTGGAGTCGGCTGGTCGCTCGGTACAGCATCGGCGGTTCACACGACATGTACGTGAAGGCAGATGTGTCGTGGAAGTCAGGCCGGTTACACAGTGAGGACATCCTGGCAGCAGATCACTGTGCTGGGAAGCGGCTGTTGGCCACAGGAAGTTACGATGGAGAGATCATCGTCTGGACACTGGACACACAGAGGCCTGTCGCTCGACTTCAACGCCCACTGCCTGGGAGggTGTATCCTCCCATCGACAGGCTGCTATTCCTTCAGAAGCGAGTTGAGGACCAACAGTGGCGAAACAGAGCTCTTCTGCTCAGCTCTCAGGCTGGATACATATGTTGGTGGAGCATCTGTGGGCCCACACACAAccacgCAAAGTTCTATGTTCCTCAAAGAGAAGATGAACGCGTAAATGCTTTACGTACAAACCATGACAACAGTTTGTTGATTACTGGAGACACTACAGGATCCATCCAGGTCTGGAACATCTCCCAGTATGGCCTGTATGATGGAGATGAGgttgtcAGTGAGCAGCCTCCACTAGTGCACACTTGGAGAGCCCACGAGGAGGCGGTAGTGAGCATGGAGGTTCTGGAGCACGGCAAAGACCTGTTTCTGGTCAGTGTGTCAGTGGACCTTAACGCCTGTCTTTGGACCAGTTGTGGAGTTTGTGTGGGCTCTTTTGGACAGGAACTGTTGTGGGATCTGAATGATTTACACACATACCGAGCCAACagaaagCTCACCAGTTCATCCACAGAGGAAGAGACAGAAACCAGTGAACTCAACCAATTAGAGAACATCAAAGGCCCGCCTTATCTCACTGACTGGGGTCAGAACTCAGGAGACGTGGGTAGAGGAGCGAGATGCCCCAGCGAGGGCAACTGTCACCAAACAGAGTCTCCTCCAATCCCTGAAGACCACCACCTGCTCCTTCAATCTCCAGACAGGAAGAGCCGAGCAGAATCTCTCAGCTGCTTAATCTCACCCTCACCAGATCATCTCAACAAGTGTGTGCTGGTGGAGCATGAGAGCGTGAAGCTGCAGAGGAAGACAGCTGCAAGGCTGGAGAAGCGGCAGGTGTTTGGAGACATAAATAGAAATAAGCTCTACCGCTTCGGCAACGAGTGCACCCCCTTTCACGCCGTGAAAATAGTGgAACTGAGGGAGCCTGAGGATGTTAGGGTAATGTCGAGGATGCTGAATGGGTCGCAGTGTTTCTCCCGAGCCACTGATCTGAGCTCACCTCTGCTCTCCAGCGACGGCTCCGCCCTCTTTGTGTCCCCCAGTAACTAAGCAAACAATTAAGATCTAAGAATGAATTTAGGTAATATGACAGAGTTTTGAGATTGACCTAATCAGTCATCGTTGCAATAAGATCgaatacacagaaaaacaaatgagggaacttaatttggatcttcccatgatcttcagaagaaccagctgatgtcac

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50915 lncRNA upstream 19027 19342099 ~ 19342794 (+) True G37751
TU50894 lncRNA upstream 147003 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 397785 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 548870 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 654093 18645635 ~ 18707728 (+) False LOC103022762
TU50938 lncRNA downstream 88768 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 103107 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 271651 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 317394 19703248 ~ 19739691 (+) True G37861
TU51100 lncRNA downstream 355015 19740869 ~ 19741119 (+) True G37882
XM_022669297.1 mRNA upstream 32998 19317712 ~ 19328823 (+) False dcxr
XM_022669296.1 mRNA upstream 32998 19317778 ~ 19328823 (+) True dcxr
XM_022669295.1 mRNA upstream 50678 19293604 ~ 19311143 (+) True rfng
XM_022669292.1 mRNA upstream 84134 19249148 ~ 19277687 (+) True LOC103043248
XM_022669293.1 mRNA upstream 84134 19249148 ~ 19277687 (+) False LOC103043248
XM_022669303.1 mRNA downstream 5588 19391442 ~ 19418752 (+) True fam20a
XM_022669306.1 mRNA downstream 50507 19436361 ~ 19452589 (+) False LOC103038698
XM_022669305.1 mRNA downstream 52190 19438044 ~ 19452589 (+) False LOC103038698
XM_007233563.3 mRNA downstream 52190 19438044 ~ 19452589 (+) False LOC103038698
XM_022669304.1 mRNA downstream 57735 19443589 ~ 19455353 (+) True LOC103038698
TU50913 other upstream 30160 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 464449 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 985476 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 985476 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1247895 18107564 ~ 18113926 (+) True G37404
TU51016 other downstream 95202 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 772026 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1633315 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1780714 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 4361615 23747469 ~ 23747541 (+) True trnar-ccu_1

Expression Profile