RNA id: XM_022669335.1


Basic Information

Item Value
RNA id XM_022669335.1
length 1609
RNA type mRNA
GC content 0.42
exon number 1
gene id slc35g1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21142586 ~ 21144194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtatttttcttaaaaacacaTAATATCCATGTTAGGGCTTTATTCTGCAACATAAAATACCCCTATTGTAAATCTTAAaattattagaattttttttttgcactgctctaatatagttattattttttgttttataaaaaaaatgtatttttaaattgtttttactgGCTTTTCTTTTCTGATTAACTACATATTAGCCCAGtgctaaaataatttctaataaTTTTAAGATCCTTTTCAGGTAAAGGGTTGCTATGATTTGAATCAAAGGTTAACACAGAGGTATTTTGTGTTGTAGAATAAAGCCCTGAAGTGGACATTATGGGTTTTTGagagaaataatgaaatattttttaacaatttcctttttttttttgtcattctgGCTAAAagattttaatcaaattaactTGTGTGGGTATGTATAAAAACTGCTTGTCCTGTTTTAAAGCACTGGGTTTATAGGGCCGCGTGGCATGCGAATCTACCTGTTCCTGAGAGGGTTTCTAGGCTCCAATGCGATGATCCTGCTGTACTATGCCGTGCTGCAGATGCCCCTGGCTGATGCCACCGTCATCATGTTTAGCAACCCCGTCTTCACGTCTCTGCTGGCCTGGATTTTCCTGAAGGAGCGCTGCACCATCTGGGATGTGGTCTTCACTGTGTTCACGCTTACCGGTGTCATCCTCATAGCCAGGCCTCCTTTTCTGTTTGGCGGAGAGCCAACGGGAATTGAGGGCGATTACACCAACCACATTAAGGGCACGGTGGCAGCCTTCGCTGGGGCCATCGGGGCAGCCTGCACTATGGTGATTCTGAGGAAGATGGGCAAAAACGTCCATTACTACCTTTCCACCTGGTACTATGCTGTGCTGGGCTTCATCGAGTGCATCGTGGCCTTGTTCATTATTGACGAGTGGACGATGCCGTCCTGCGGCTGGGACCGGTGGAACCTGATGGCTATCGGCATTCTGGGTATAGCTGGGCAGATGTTCCTGACCAAAGCTCTGCAAATCGAGAAGGCTGGCCCAGTAGCGCTCATGAGGACTATGGACGTGGTTCTGGCCTTCGTCCTGCAGTTCCTCTTCCTCAATCGCAGTCCAACCTGGTGGAGCGTCGGTGGAGCTCTGTGTGTGATCAGCAGTACCAGCGGCGTGGCGCTGAGAAAGTGGTACAACAGCAGCAGACAACAAACCTGAGCTCCACCTgagtttatacatttataatttttattgatAAAACTGAAAATGAGATATTGTGCACTAATTAGCTTTTTTGTAGCAACATTTTATATTCAAGGTCGTagaccagtcaaaagtttggatataccttttaatttagtgttttttatttatttattattttttttctacattaatgtaaatgaatactaaagtcatccagactatgagggaacacataaggaatcatgtagtaacttgaaAGTGTTAAACTAACCAAAATTATCTGGGGTGCTATTGACTTGCGCTTATCCTATGCAACAGAGGTAAGTCTTGCTCTTCTATTTCTgcggtggtcctgatgagagccagtttcatcatgatgtttttcatggtctttgtgactgcacttcagGATACTTCACag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51380 lncRNA upstream 2685 21131630 ~ 21139901 (+) True G38093
TU51377 lncRNA upstream 13845 21118229 ~ 21128741 (+) False lgi1
TU51365 lncRNA upstream 58938 21044512 ~ 21083648 (+) False G38081
TU51364 lncRNA upstream 94482 21044512 ~ 21048104 (+) False G38081
TU51366 lncRNA upstream 94482 21044512 ~ 21048104 (+) False G38081
TU51389 lncRNA downstream 127938 21272132 ~ 21272572 (+) True G38101
TU51397 lncRNA downstream 172909 21317103 ~ 21317345 (+) True G38106
TU51387 lncRNA downstream 177645 21321839 ~ 21322611 (+) True G38099
TU51413 lncRNA downstream 214945 21359139 ~ 21359560 (+) True G38117
TU51418 lncRNA downstream 220167 21364361 ~ 21369269 (+) True G38120
XM_022669334.1 mRNA upstream 13822 21109080 ~ 21128764 (+) True lgi1
XM_022669333.1 mRNA upstream 64685 21055568 ~ 21077901 (+) True pde6c
XM_007232861.3 mRNA upstream 98696 21031902 ~ 21043890 (+) True cep55
XM_007232859.3 mRNA upstream 140575 20998115 ~ 21002011 (+) True emc9
XM_007232858.3 mRNA upstream 145929 20990981 ~ 20996657 (+) True LOC103033426
XM_022669336.1 mRNA downstream 22374 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA downstream 22374 21166568 ~ 21296823 (+) False plce1
XM_022669338.1 mRNA downstream 94886 21239080 ~ 21296823 (+) False plce1
XM_007231471.2 mRNA downstream 207997 21352191 ~ 21352892 (+) True LOC103044640
XM_022669341.1 mRNA downstream 286278 21430472 ~ 21474118 (+) True ace
TU51357 other upstream 111789 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 984247 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1657671 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1810925 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2245214 18897302 ~ 18897372 (+) True trnag-ccc
XR_002649894.1 other downstream 22374 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2603275 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2603377 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2603479 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2603581 23747775 ~ 23747847 (+) True trnar-ccu_4

Expression Profile