RNA id: XR_002649894.1


Basic Information

Item Value
RNA id XR_002649894.1
length 7590
RNA type misc_RNA
GC content 0.55
exon number 35
gene id plce1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21166568 ~ 21296823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctctCGGTAAATCAGGAGGATTTAAGGAGTTTTTCTGGAGCAGCAGACCGGTCTCCTCTGTTTCTCAGATTTCTAAAGGGCATGAGGCCTTGAGAGACGAAGATTGGAGCAGGGAAGAACATCGTTACGCAACCAAGAAGgctgtttaatattaaacaaattcaTCTCATTGAGTTTTGGATTGTTTGCTTGAAACGTTATTCCATTTTCTGAAGCTTTGGATTTCtaccctgttttttatatttattttggtctGGAGGAGATTTGCTGTTGACCACTTTTTGGTATGAGGGTTTGCGTTGAAGGAAATGCAAGTATCGACCTTCGTAGCGCCAACATGACCACTGAGAAGGTTGCCGCAGTTCTAGGAGTCAAAGCAGCATCTTCTTCCTTATCCTCAAATCTCAAGAAGGAGCTGCTGGCTTTTGATTTTGAGTTGACTGAGAGAAGCAGCTCTGATCCACAGCTCCTCTGTTCATGTTCTTCTTCATATCGTCCACATTTGTCTCCATCCAAAGACCACCAGGACTCCAGATCGTATGAGCAGACTGCAGGGAGCCCTTTGGACACCAGATCTAAGAGTTTGGACAGTCTGGGAAATGTATGTGGGGATGCGTATTGCTGCTCGGCTGAAGGATTCACATGCAGACAGTCGAATGGGACGTGCAGCCCAGTGGAAACGAACGGGACTTGCCAGAAATCCGTCCCTCTATCTGGAGACCGGGGAATGACGTTTCAGCCGAGCCGGGCCAACGGACTGCAGAGAACAGAGGGGTTTTCTTCTGAAGTGAATCACCTCATTGGAAAGACGCCAAGCATGAGCGGCTCAGCCAGTAGACCGGGCCAGCTGGAAGCCAGAGTCCCTCAGCACGGGGAGGAGGACAGGCCTGCCTGTGAGCTCAGCACCAGGAGAAGCAGCCTGCCCACATTTTCCCCACTGCGGTTCCGCTGCGCATGTGACAGCAGGGGCAAGCCAGAAGCCACAATGCGTGACCGCATGCCGTACCAGGTGGATTTGAGGTGTACCCACTGCCACAGTGCAGGCTTCTCCAGCCTGGAAAGGCTCAACAGGAGACCCAAATCCAAGTGCACTCTGGgacgctgcacacacacactgggtcAGGGCTCCGGACTCTCCAGACTGAAACTGACCCTGCAGTCTCACAGCGACGGTGAAGGTGCTGCGCCTGATGGAGATTTTGTGAGGAATAAGAAGGAGCGCTCAACTGTGCTGGTCAGGAGATACCTGAAGAACAACAAGAAGATCACCAAGATGGTGTGCTCTGGCACCAGAGCCATTGTGAGGACCCTACCAACCGGCCATGTGTCTGAGCGGGTGTGGGTGGTGGTTTTCAGAAGAACAGCTGATCGGCGTGAGGGATGTGCTTTAGCAGCTTACTGTAGATACAGCAGAGAGCGTCATGCGGTCCAGCTGCAAGTCTCTCGAGCTCTTCTCATCTACCCGGGGCTCAGGCTGGCACAGCTCCAGCTTGCTTTCCCGACCCTGAGGCCTGAGGTCCATCTCTTGCACCCTGCCCGGAAGCTGCTGGCTAAACCGCTAGCATGGCCGCCTGCCTGCCCGCTGCGGGTTAAGTACCAGGCTTGCCTGCTCAGAATCAATTTAGCCGCCCGCCTAAGCGGGGCACTGCTGGAGAGCACGCTTGCTCTCGGGGCCCGCAGCAGCCTGCCGGGCGTTGCCCTCGGCTCTACCGGCAGACCCATGCTGAAAGAGTTCTGCAGCTCCATGGCCAGCTCCAGCTCGCTGTCCTCTAGCGTGACGGGCATTAGTAAGGAGTTGGCTGACCTGCGTCATCTCATCCAGTTCCCAGAGGAAATCGCGAGCATACTGACCGAGCAGGAGCAGCAACTGTACCGCCGGGTTTTCCCTCTCGACTACCTCTCCTTCCTCACCCGCGACCTGAGCAGCCCCGAATGCCACAAACGCCACCCGCACCTCAAAGCCTCTCTATCAGCTCCCACCATGCCCACCCAGAACACCACGCACAACACAGTGGAGGACCTGGTCACACGCTTCAATGAGGTCAGTTCCTGGGTGACTTGGCTTATCCTGGCTGCTGGCTCTatggaggagaagagagaggtcTTCTCATACCTGGTCCATGTTGCCAAGTGCTGCTGGAATATGGGCAACTACAACGCAGTGATGGAGTTCTTGGCAGGCCTGAGATCCCGTAAAGTGCTGAAGATGTGGCAGTTCATGGACCAAACAGACATTGACACCATGAGACGCCTAAAGGACGCCATGGCCCAGCACGAGTCCTCGTCTGAGTACAAGAAGGCGGTGAACCGTGCCCTCAACATCCCTGGCTGTAAAGTGGTGCCGTTCTGCGGCGTGTTCCTGAAAGAGCTCAGTGAAGCTCTCGACGGAACAGCCAGTCTGATTGGCCTGCGTTTTCCTTTCAGTTCTCAAGAGGACTCGATCGAGttTGTGTCCGACTACAACGGTCAGCTGCATTTTCTGCAGAGGGTGGGAAATGACGGACTACACAACATTGAGAAAGAGGCCACAGTTAGTAACATCCTTCAGACCATCCGTAGCTGCAACCGCAGCCTGGAGGCAGAGGAATTGGAGGAGAGCGTGAGGGAACCCAGCACTGTCCTCCTTAGGAACTCTTTCAAAGACAAAAACAGGAACCAATTTCTGGTTGGGGACCTCTCTGACTCTGAAGGGGATTTGGTGGAGCCTCCCCGTGAGACGGACCTACAGAGCCCAGAGGAGCCACATGGAGCTTTCTGCCACGGCACGGAGCTCATCCCCTGGTACGTTCTCTCGCTGTCGGCCGACATCCACCAGTTCCTGCTGCAGGGAGCAACAGTCATCCACTTCGAGCAGGAGAGCCATCAGAGCAGCCGCTGCCTCCTCCGCCTGCAGCCTGACAACTGCTTCCTCACCTGGTCCAAACCCCAGAGCAGCTGCCCTCCAGGTATCCGGAGTAAGGGCTTTCCTCTGGACCCCAGCATCCACAGCCATGCAGCTCTCTGTGGCCTGACGGAGGGAGTCCTGGACCTCAGCGTGGTAAAGGCTGTGTTCATGGGTCACCCAGCTGTGGACATCAACTTTGTGTGTCTGCAGCACAAGCTGTGCAATATGAGCGCAGAGGAGAACGGCATCTCGCTGTTATATGGAGCGCACACCACCGACAACAAGCTGCTGCACTTTGTGGCTCCAACGCACACAGCGAGCGTACTGTACGAGGGCCTGCAGCAGCTGCTCAGTGCCATCCGCAAGATCAAGAACTTCCCTGACCAGAGACTGCAGTGGCTGCGCAGACAGTATGTAGGCCTTTACCAGGAAGACTGTAGGTTTGAGGGGCCGACGCTGGCACAGGCCATTGAGCTGTTTGGTGGCCGGCGCTGGGGTGTGAGCACCGGCAGCTCTGGCTCTACCAGCAGGAACACTGAGAAGACCACTGCTCAGAAGAACAGCCCACTGAGTATGAACTCTAACgtcaagaagaagaagaaaacccTCATCAGGGGAGACAGTGGGGATGGAACAGATGACGAAATGATCTCACGCAAAACTAAAAGCTGTAAGGAGGTTCTGTGCAGGAGGTCCTCTGATCCTTCAGAAGGTGTGGAGCAGGAAGAGAATGAGGACTCTGTCCCATTTGGCAGCCCCGGAACTTTCTCTTTACCCAGCACCAAATCCCAATCCCCTGGAACGTCCTCAATCACTTCCTCTTCCTGCTCCTCCACCTCGAACACCTCCACCCCTGCCCGGCCCCACTCCTCCCCTGTCCTCACTGGCAACTTCAAAACCCAGACCGGggcatggagcagcaggagctggcacGGTCGAGGGAAAGACTGTTTCCGAGGCTTCCAGAACCTCATGCTCTCAGACAGCATCATGAGCTTCATCGAGTTCGTGGAGCTCTTCAAGTCTTTCAGTATCCGCAGTAGGAAGGACCTGAAAGAGCTGTTTGACACCTACGCCGTTCCCTGCAGCCGCTCGGGCCCGGACTCAGTGCCTCTCTACACCACTCTGAGAATCGACGACAAAGTGACAGGCCTTCAGCCTGACCTAGACCTCCTGACCCGTAACGGATCAGACCTGGGCCTGTTTATCCGCACGCGCCAGCAGATGTCCGATAACCAGAAACAGATTTCTGATGCCATCGCCGCTGCCAGCATTGTGACCAACGGCACGGGCGTGGAGAACGCGTCCCTGGGCGTGTTGGGTCTTGCCATTCCTCAGCTTAACGATTTCCTAGTCAACTGTCAGCAGGAGCACCTGACCTACGATGAGATCCTAAGCATCATACAGAAATTTGAGCCTTCTTCCAGCATGCGCCAGATGGGTTGGATGTCCTTTGAAGGCTTTGCCAGGTTTCTGATGGATAAAGACAATTTTGCCTCTAAAAATGAAGAGTCACAAGTGAACTTGGATGAAATGCAGTATCCACTGTCTTACTATTACATTGAATCTTCACACAACACTTACCTCACTGGCCACCAGCTGAAAGGGGAGTCTTCAGTGGAGCTCTACAGTCAGGTGCTGCTGCAGGGTTGTAGGAGTGTGGAGTTGGACTGCTGGGATGGTGATGATGGCATGCCCATTATTTACCAcggacacacactcaccaccaAAATCCCCTTCAAGGATGTGGTGGAGGCCATCAGTCGCACTGCATTTGTCAACTCAGAGATGCCGGTCATCCTGTCCATTGAGAACCACTGCTCTCTTCCTCAGCAGAGGAAGATGGCTGAAATGTTTAAGACGGTGTTTGGAGACAAGCTGGTGACAAAGTTCCTCTTTGAGAGCGATTTCTCAGATGACCCACTGCTTCCGTCGCCTCTGCAGCTCAGGGGAAAAATCCTGCTCAAGAACAAAAAGTTGAAGGCACATCAGGCGCCTGTGGATATTCTGAAACAAAAgGCACTCCAGCTGGCACACATGCAAGCCCAGGCCAACAACAGTACACCCTCCGGCAGTTGTTTAGGCAACcacgaggaagaggaggaggaggaagatgagTACGACTATGACTACgagtctctttctgatgCCGATGTCCTCAATGCttccactgcctctttttgccAGGAAGATAACATCCTGGATGACAAACCTGAGGGAAAGTCTTCGAGTGAGAAGCTCCAGTACGAGTCTAATGACGAAATGCCAAAGCGGTTTAAGAAAGCAGGCAGTAAAGGAAAGATGTTTGACATGGAGCTGGGGGAGGAGTTCTATTTGCCGCAGAATGAGAAGGAGAGCAGGCAGATCGCTCAGGAACTCTCAGACCTCATAATCTACTGCCAGGCTGTTAAATTCCCAGGACTCTCCACACTCTCGCCTATAGGCCCTGGAAGGGCAAAGGACCGGAAGAGTAGAAAGTCCATCTTTGGCACCGTTCCTGTGCGTGGGAGCCCCGGGGAGCCAGTGACGTTGGTCCGTGGCCCAGGAAAAGCTGTTTTAGAGGGTGTAAAGGGGACTTTGGAGGAGCAGGCGCAGTCTGTATCTGGTTCTGCTCCCTCGCTCAGCGCAATCATCCGCACTCCCAAGTGCTACCACATCTCCTCCGTCAACGAGAACGCTGCCAAACGCCTGTGCCGGCGCTACTCCTCCAAGCTGATCCAGCACACAGCGGCCCAGCTGCTCCGTACTTACCCTGCTGCTACTCGCATAGACTCCGCCAACCCAAACCCGCTCATGTACTGGCTGCACGGCATCCAGCTTGTTGCTCTGAACTACCAAACTGATGaTCTGCCCATGCAGCTAAACTCTGCATTTTTTGAGGCTAATGGTCACTGTGGGTATATCCTGAAGCCCCCAGTGCTGTGGGACCGCTCCTGTCCACTCTACCAGCAGTTCAGTCCAATGGACCGAGAGTTGGAGCACATGACCCCCACTGTCTACACACTCACtGTGGTGTCAGGGCAAAACGTGTGTCCAGGGAACAGCAGTGGCAGCCCATGTGTGGAGGTAGAGGTTTTAGGCCTGCCTGTGGACACCTGCCACTTCCGCACCAAACCCATCCATCGcaacacactcaaccccatGTGGAGTGAGAACTTTTCCTTCCAAGTGCACTTCGAGGACATGGCCTTCCTGCGACTGGCTGTGGTAGAgaacaacagctcacagatgacAGCCCAGAGGATCTTACCACTCAAAGCCCTCAAACCTGGCTACAGACACGTGCAGCTGAGGAACCAGCACAATGAATCACTAGAGGTGTCCAGCCTGTTCCTGTTCAGCCGGAGGACGGAGGAGAGTCCAGTTGGAGGACCCCGGCCTGCTGCTGTGTTGTTTAGCTCAGAGGAGAGGCGAGCGAGGATACAGCACAAAGTGACGGTGCATGGTGCACCAGGCCCAGAGCCATTCACTGTAGTCACTGTGAGTGAACACATCACAGCCAAGCAGCTTTTGGACATGTTGGTTCCAGATACTTCTGCGGACTACTTCCTAATGGAGGAGAAGATTCCTCTGTCGAAGGAGAGAAGCGAGGTAAAGAAAGTACCTCAGCAGCGCCCCCTAACTGCTGACGAGAGTGTGCTTAAAACAGTGAACAGCTGGCAACCAGAGGAGGGCTACGTGGGCAGAATATGCCTCAGAAACAGGAAGGAGAACGTAAACGAGAAGAGCACAGTGATGGAGGGAGCAGAGGAGGTCAGTactggaggagaggaggagatgTTTTTCGTCCAGGTTCATGACGTTTCTCCAGAGCAGCCTCACACGGTCATTAAAGCCCCGCGCTATAGCACTGCCCAGGACATCATCCAGCAGACGCTGAGCAAAGCCAAGTATTCTTTGAGCATCCTGAGTAACCCCAAGCCCAGCGACTACGTGCTGATGGAGGAGGTGAGCCGTGAGCTGGCTGGAAAGAAGATGTCCTCGGCCAAGCCCTGTCAGCGTGTGCTGCAGGATCATGAAAGCGTGTTCCAGGCCCAGAGCAAGTGGAAGGGTGCCGGCAAGTTCATCCTCAAACTCAAAGAGCAGATTGCTCGTGAGGATAAGCGGAGGGGTGTGTCGTTTGCCAGTGAGCTGCGGAAGCTGACGGGCCGCAGCCGCAGTGTGACGGTGAATGGTCCCCCGCTACACGAGGCAGCGCACAGTAAGGACGAGCGCGGAACATGGCCCGCTGCTCCGCCTCTGCCTGAGGCCTCTGAGTGAACGCACGCTCTgcgatgtgtgtttgtgtgtgcgcaGTGCATGGAGCCCCAGCCAGgatctCTGTTGTCAGTTGGACTAAAGGCCTGGGTGGCTGAGGGCTGTCTGTGCTCTCAGAGGCAGGTAGAAACAGGACGTCCTGAAGACAGCAGCACTCCCTCAATCTGGACCTTCCCACTGCTGTGGAACTGGAAGCTCCACAAGTGAGTGTTCAAAAACAGCAGCGGCACTAAAACCTCACACAGAGCCTCACACTTCAGGCTTCACTGCAGGAGCTCCCAGTACCCCACACACTGGCTGAGGAACAGCGCGGGACAGTAGCTCAGTAGGCTTGTTAGCGCTTAGCATTAGCCTGCTGTTGGGTCAGAATAGGTCGGTGTAACTCTTCTTCTTACTCCGTCTTCATTTCCCTCCTCTGATTTGGCAGCAGTGGGCTGGTGGTCGTTT

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0006629 lipid metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51380 lncRNA upstream 26667 21131630 ~ 21139901 (+) True G38093
TU51377 lncRNA upstream 37827 21118229 ~ 21128741 (+) False lgi1
TU51365 lncRNA upstream 82920 21044512 ~ 21083648 (+) False G38081
TU51364 lncRNA upstream 118464 21044512 ~ 21048104 (+) False G38081
TU51366 lncRNA upstream 118464 21044512 ~ 21048104 (+) False G38081
TU51397 lncRNA downstream 21813 21317103 ~ 21317345 (+) True G38106
TU51387 lncRNA downstream 26549 21321839 ~ 21322611 (+) True G38099
TU51413 lncRNA downstream 63849 21359139 ~ 21359560 (+) True G38117
TU51418 lncRNA downstream 69071 21364361 ~ 21369269 (+) True G38120
TU51451 lncRNA downstream 279572 21574862 ~ 21620560 (+) True G38152
XM_022669335.1 mRNA upstream 22374 21142586 ~ 21144194 (+) True slc35g1
XM_022669334.1 mRNA upstream 37804 21109080 ~ 21128764 (+) True lgi1
XM_022669333.1 mRNA upstream 88667 21055568 ~ 21077901 (+) True pde6c
XM_007232861.3 mRNA upstream 122678 21031902 ~ 21043890 (+) True cep55
XM_007232859.3 mRNA upstream 164557 20998115 ~ 21002011 (+) True emc9
XM_007231471.2 mRNA downstream 56901 21352191 ~ 21352892 (+) True LOC103044640
XM_022669341.1 mRNA downstream 135182 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA downstream 157933 21453223 ~ 21474118 (+) False ace
XM_007241520.3 mRNA downstream 330311 21625601 ~ 21629176 (+) True dlx3
XM_022669348.1 mRNA downstream 529089 21824379 ~ 21828127 (+) True LOC111192390
TU51357 other upstream 135771 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1008229 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1681653 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1834907 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2269196 18897302 ~ 18897372 (+) True trnag-ccc
trnar-ccu_1 other downstream 2452179 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2452281 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2452383 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2452485 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 2452587 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile