RNA id: XM_022669351.1


Basic Information

Item Value
RNA id XM_022669351.1
length 2435
RNA type mRNA
GC content 0.47
exon number 6
gene id sgms1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21938629 ~ 21950677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatgatgatgatggtgatgacgatgatgatgactGGAGGAAATCGGCGTGTGCTGTAGCGGCCTGTGCTGTTCTGCTCCCTCCCCCAGCTTGCTTCTGATTCTCCAGTCGATCTCCACCAGCTGAGGGAAGGGCATGAAGAAAGCAGGCCAGTGGTCTAAGGAACAGGTCAGTCTCTGGCTGGCTGAAGAGGGCATGCAGGAGTATGTGGAGCCCCTCCAGCAAGCAGACGGGCAAGCCTTACTGCGCCTCTCTCAGGCTGACTTCCAGAAGCCTCCTCTATCCCGAATTTCACCAGACAGTGGAAAGCAGCTCCTGGAGAAGATCAAGACACTGAACATCGAGCACCATATAGAAGCACATAAAAACGGTTTTGCCAACGGTCACGTGGTCATATCTCACGAAGGTGATGCTGGTGCCTCTAGCAAGACCAAACGGAACGGTTTGGTCAATGGCTTTCATAAGGAACTGGTGCGCATTCCCATTCCTGAGCCGGCTGGGCCGCAGTTCCCCACAGAATGGGGCAAGACTGGCGTAGCCTTCTTGTATGCAATCTGTTGCTTCGTCTTCACCAGCATCATGATTTCTATAGTCCACGAGCGCGTGCCTCCTAAGGAGGCGACCCCTCCTTTACCCGACAAGTTCTTCGACCTGTTCGATCGAGTGGAGTGGGCTTTCTCCGTATGTGAGATAAACGGGATGATCCTGGTGATCTTGTGGATCATACAGTGGAGTCTCATGAAACACAAGTCAATTGTTGGTCGGAGGTTCCTGTTCATTGTGGGGACCCTGTACCTGTACCGGTGTATCACCATGTACATCACTACACTGCCTGTTCCAGGGATGCATTTCAAGTGTTCACCCAAGCTGTATGGTGACTGGGAGTCGCAGATGCGGCGGGGGATGAAGATGCTTGCTGGCGGGGGCTTGACCATCACCGGCTCCCACAACCTGTGTGGAGACTACCTGTACAGCGGCCACACGGTCATGCTGACACTCACCTATCTCTTCAtgaaagaatACTCTCCTCGGCGGTTCTGGTGCTACCATTGGGGCTGCGGGCTGCTGTGCGCTGTTGGGATCTTCTGCATCCTTCTGGCTCATGACCACTACACTATAGATGTAGTTATAGCTTACTTCATCACTACACGCCTCTTCTGGTGGTACCACACCATGGCCAATCAGCCAGATCTAAAGAGGCCGTCTCGGACCAACTTCATCTCTCGCGTGTGGTGGTACAGGTTTTTCCAGTACTTGGAGCAGAACGTGAAAGACGTGGTACCGCGGAGCTACCAGATGCCCATCTCATGGCGATCGCTGCAGTCGGGCCACGTGAAGTACAGCAGGATTGACTCTGATTAAACTGCAGTATCCAACCGAGGAGGGGGAATCAAAACACTTGCCTTAATAAGTGCCAGGACTCGATCACATgaggatggtgatgatgatgatgatgacctAACAATCTCCTATTGTACAAGCCAATCCCTTTAGTACTGAGCTACAAGGCACTGTGACTGTCAAAAACTCCTCCAAAGCACTTCATTCCTCACACACTGCCCACGTTCCATCTGCGTTTCACACCCATTGTGCTACAGGCTATGTAGTGTGTGGCAAATGGGACCAGGCTAACGGCTAATGGCTAATGTCGTTGTATCAGGTAGTATAGCTAGCTTAGAAAATGCCAAAATCGGATCAGGCACTGCAAACGCTGCATTACCCATTCTTCCTATTTTGGGTGGTTAGATGTTTACTGTGGTCTGTGTTCCAGTACTTGAGACTTGAGATTGCCGGAGGTCAGTTAGAGTGTAGACGTAGACAGGCTTATGACTTTTatagcagctgcagcagcacatgttagcattagcattagcataaatGTTTCTGTGTGTGATCTGACATGACTGAgcctaatttaattattatttaaaaaaataaaaaaataaatctgactgaCATACCTGCACTCTAACCCCTCCCACAAGGCAGTAAACAATGTCGTCCTCGTTTCAGATTATCTGAGATTTGAGATTATCTGATGAGCTCAAATGCAAAGTACAAGTACAAATGTCCCTTTAACTGCCATCTCGTAGACTCCGCCCCCAACAAAAAGACCTCTAGTGGAAGGTAGAAGCATATTCGAAGAGAATTGATATTTTGTAGCGATTCGCTCAAACATTTAcaacttcacaaaaaaaaataaaacaagtttatacggaaaattaaagtatttttcacacaaattgtacatttttaaaaagtatatatatatatatatataaatatatgtgtacatatatatagaGTAAAAGCAGACAAGTTCCTCAGTGCCTTTCTTGCCATGACTGTACACTAATCTTGTGGTTTATGGATATACGgttatgtatatgtttttgttgtccttctgttttttttttttttattgtaatagaAAAA

Function

GO: NA

KEGG:

id description
K04714 SGMS; shingomyelin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51686 lncRNA upstream 1556 21909061 ~ 21937073 (+) True G38324
TU51673 lncRNA upstream 55723 21881436 ~ 21882906 (+) True G38314
TU51668 lncRNA upstream 67093 21870422 ~ 21871536 (+) True G38310
TU51658 lncRNA upstream 97351 21828150 ~ 21841278 (+) True G38306
TU51650 lncRNA upstream 159536 21778658 ~ 21779093 (+) True G38301
TU51698 lncRNA downstream 62822 22013499 ~ 22016473 (+) True G38330
TU51764 lncRNA downstream 102682 22053359 ~ 22053669 (+) True G38375
TU51790 lncRNA downstream 301472 22252149 ~ 22252642 (+) True G38391
TU51791 lncRNA downstream 328277 22278954 ~ 22327073 (+) True G38392
TU51774 lncRNA downstream 402832 22353509 ~ 22354614 (+) True G38379
XM_007233994.3 mRNA upstream 60416 21873312 ~ 21878213 (+) True g6pc
XM_022669347.1 mRNA upstream 87648 21843965 ~ 21850981 (+) True ptges3l
XM_022669348.1 mRNA upstream 110502 21824379 ~ 21828127 (+) True LOC111192390
XM_007241520.3 mRNA upstream 309453 21625601 ~ 21629176 (+) True dlx3
XM_022669341.1 mRNA upstream 464511 21430472 ~ 21474118 (+) True ace
XM_022669446.1 mRNA downstream 8770 21959447 ~ 21984284 (+) True LOC103023313
XM_015601491.2 mRNA downstream 37127 21987804 ~ 22011805 (+) True LOC103021762
XM_022669448.1 mRNA downstream 119570 22070247 ~ 22097898 (+) True LOC111192422
XM_022669352.1 mRNA downstream 147074 22097751 ~ 22350082 (+) True prkg1
XM_007233996.3 mRNA downstream 418099 22368776 ~ 22371487 (+) True dkk1
XR_002649894.1 other upstream 643339 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 907832 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1780290 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2453714 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2606968 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 1796792 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 1796894 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 1796996 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 1797098 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 1797200 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile