RNA id: XM_022669352.1


Basic Information

Item Value
RNA id XM_022669352.1
length 2394
RNA type mRNA
GC content 0.52
exon number 19
gene id prkg1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22097751 ~ 22350082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGGCGAAGTGCCTCGGCATGCGGGATCCAGCGGCAGCGCTCAGCGGGAACCTCTCCTCTCCGCCCGCGATGTGTGAGCAGCTGTGGAGCTCCCGGGGCCGATTCTGCTCTCTGCGTGTTCCCGCTCTCCTCCCCCAGGCGTGTTAGAGCGGGTCCGGCTGCGTGGTTCATCTTTCCAAGCCTTTTTCCCGCGGGTCTCGGTACCGTAAAGTTCAGCGATGGGCACCCTGCGCGACCTCCAGTACGCCCTGCAGGAGAAGATCGAGGAGCTCCGGCAGAGAGACGCGCTGATCGacgagctggagctggagctggaccAGAAGGACGAGCTAATCCAGAAGCTCCAGAACGAGCTGGATAAATACCGCTCCGTGATCCGACCGGCCACTCAACAGGTCCACAAGCCCACCAACGAGCTCCAGGAGCAGCAGAGGACCAAGAGGCAGGCGATCTCCGCCGAGCCCACCGCGCTGGACATCCAGGACCTCAGCCACGTTACACTGCCCTTCTACCCCAAGAGCCCAGAGTCTAAGGAGTTGATCAAAGAGGCCATTCTGGACAATGACTTCATGAAGAACCTGGAGCTGTCTCAGATCCAGGAGATAGTGGACTGCATGTACCTGGAGTATGAGAAGGAGAGCTGCATCATTAAAGAGGGAGATGTGGGCTCTCTCGTCTATGTTATGGAAGATGGCAAGGTGGAGGTGACCAAGGAGGGCATGAAGCTGTGCACCATGGGACCGGGCAAGGTGTTCGGAGAACTGGCCATCCTGTACAACTGCACCAGAACGGCTACTGTTCAGACTCTCACCAATGTGAAATTATGGGCCATCGACCGACAGTGTTTCCAGACCATCATGATGAGGACAGGACTCATCAAGCACGCAGAATACATGGAGTTTTTAAAGAGTGTTCCAACATTCCAAGGCCTTGCAGAAGAAATACTCAGCAAACTGGCAGATGTGTTGGAAGAGacTCACTATGACGATGGAGAATATATTATTAGACAGGGGGCGAGAGGAGACACCTTCTTCATCATCAGTAAAGGAAAGGTGAACGTTACCCGGGAGGATTCGCCCAGTGATACTCCAGTTTACCTGCGTGCTTTAGGGAAGGGAGACTGGTTTGGAGAGAAAGCCCTTCAAGGAGAGGACATCAGGACGGCCAATGTCATCGCTGCTGACGCTGTCACCTGCCTGGTCATCGACAGAGATTCTTTCAAGCATTTGATTGGAGGTCTGGACGACGTCTCCAGTAAAGGCTATGAGGATGCTGGAGCCAAAGCCAAaTACGAGGCGGAAAACGCTTTCTTCTCCAACCTGAAGCTGGCCGACTTCAACATCATCGACACCTTAGGAGTGGGAGGATTTGGACGAGTTGAGCTGGTGCAGCTCAAAAGTGAGGAGACCAAAACGTTCGCCATGAAGATTCTGAAAAAGCGCCACATCGTGGACACGAGGCAACAGGAGCACATCCGCTCTGAGAAACACATCATGCAGGAAGCTCATTCAGACTTCATAGTAAgattGTATAGGACGTTCAAAGACAGCAAGTATCTGTACATGCTAATGGAAGCTTGCCTGGGAGGAGAGCTGTGGACCATTCTTAGAGACAGAGGATCTTTTGAAGACTCCACAACACGGTTCTACACCGCCTGTGTGGTCGAAGCCTTCGCTTACCTGCATTCCAAAGGGATCATCTATCGGGATCTCAAGCCAGAAAACCTCATTTTGGATCATAGAGGCTATGCAAAGCTGgtggATTTTGGTTTCGccaaaaaaattggatttgggaAGAAGACGTGGACTTTCTGTGGAACGCCGGAGTATGTAGCCCCAGAGATTATCCTCAACAAAGGCCATGACATCTCAGCAGATTACTGGTCGTTAGGTATCCTCATGTATGAACTTCTGACTGGCAGCCCACCATTCTCAGGACCTGATCCAATGAAGACATACAATATCATTTTGAGAGGTATTGATATGATAGAATTTCCAAAGAAGATCACCAAAAATGCTGCCAATCTAATAAAGAAACTATGCAGgGACAATCCATCTGAGAGACTGGGAAACTTGAAAAATGGGGTAAAAGACATCCAAAAGCACAAATGGTTTGAAGGCTTTAACTGGGAAGGTCTGCGCAAAGGAACACTCACCCCTCCGATTATCCCTGATGTGTCATCTCCCACCGACACCAGTAATTTCGACAGTTTCCCCGAGGACAGCGAGGACCCGCCCCCTGATGATAACTCTGGCTGGGACACTGATTTCTAAACCGGGCCGTGTGAAGTGCCGCGATCAGCCCGTAACGATTGTGGGTCAGGACCTTCTGGACGTTCTTGTGTTTGAGTGACTGCTGCTCGAGGAGGCGgagtttaacaaaaaaacaataaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0030553 cGMP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG:

id description
K07376 PRKG1; cGMP-dependent protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51764 lncRNA upstream 44082 22053359 ~ 22053669 (+) True G38375
TU51698 lncRNA upstream 81278 22013499 ~ 22016473 (+) True G38330
TU51691 lncRNA upstream 84698 21934281 ~ 22013053 (+) True G38325
TU51686 lncRNA upstream 160678 21909061 ~ 21937073 (+) True G38324
TU51673 lncRNA upstream 214845 21881436 ~ 21882906 (+) True G38314
TU51774 lncRNA downstream 3427 22353509 ~ 22354614 (+) True G38379
TU51847 lncRNA downstream 60309 22410391 ~ 22410651 (+) True G38438
TU51848 lncRNA downstream 68806 22418888 ~ 22419169 (+) True G38439
TU51849 lncRNA downstream 79319 22429401 ~ 22430016 (+) True G38440
TU51871 lncRNA downstream 264681 22614763 ~ 22617893 (+) True G38460
XM_015601491.2 mRNA upstream 85946 21987804 ~ 22011805 (+) True LOC103021762
XM_022669446.1 mRNA upstream 113467 21959447 ~ 21984284 (+) True LOC103023313
XM_022669351.1 mRNA upstream 147074 21938629 ~ 21950677 (+) True sgms1
XM_007233994.3 mRNA upstream 219538 21873312 ~ 21878213 (+) True g6pc
XM_022669347.1 mRNA upstream 246770 21843965 ~ 21850981 (+) True ptges3l
XM_007233996.3 mRNA downstream 18694 22368776 ~ 22371487 (+) True dkk1
XM_022669358.1 mRNA downstream 648597 22998679 ~ 23000623 (+) False LOC111192392
XM_022669357.1 mRNA downstream 648785 22998867 ~ 23000623 (+) True LOC111192392
XM_007235379.3 mRNA downstream 1037898 23387980 ~ 23396378 (+) True tfam
XM_022669360.1 mRNA downstream 1068771 23418853 ~ 23594042 (+) True bicc1
XR_002649894.1 other upstream 802461 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 1066954 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1939412 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2612836 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2766090 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 1397387 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 1397489 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 1397591 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 1397693 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 1397795 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile