RNA id: XM_022669431.1


Basic Information

Item Value
RNA id XM_022669431.1
length 7062
RNA type mRNA
GC content 0.55
exon number 43
gene id LOC103040920
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9829485 ~ 10373341 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGCGTTACCGGTTTCTTActggataacacacacacatacacacgcacaccgGAGCTCGAGCTCAGCTGGAGGCGCGCGGGGGGCCAGAAGCTGCTGTGTTTACCGGACAGGAGTTAGTGGAGTTAAATGAATGGGCGCTCTCGGTGACGCGCGCGCGGTCATGTGGAGCGGCGTTTTGACGGACCGGGAGTGAGACGCGCACGCGGGGAGCACGGTGTGAGACGCGGTTGGGGCTCGGTGTGTCGGAGGCGCAGTGGAGCGCGCGCGCTGTGGACTGGGCTGTACTGGAGCGCCTGCGGTGAACTGGTTGTACTGGACGTTACTGGACTGGGTGTACTGGGCTGGACTGGGAGTCGCGATGGAGCGCGTGGAGCTGTGGGTCAGAGGAGTTCTACTGGTGACCGTCATCCTCACACACATCAGCTCAGCACAAGatgaCGTTCCTCCGTACTTTAAAACAGAGCCGGTTCGGACTCAGCTGCACCTGGAGCGGAACCGGTTGGTTCTGACCTGCATGGCTGAGGGCAGCTGGCCACTGGAGTTCAAATGGATTCATAATGAAACAGAACTGACCAGCTTCTCACTGGAatacaggTATCTGATCCCCTCTCTGGATCGTACTCATGCTGGATTTTATCGCTGTATAGTGAGGAACCGTGTGGGAGCTCTGCTGCAGCGCAGGACGGAGGTTCAGGTGGCCtttatgGGAGGGTTTGAGGAAGGTGAAAGGGTGCAGTCTGTTTCTCAGGGCGATGGTGCGGTCATCCCAGCCCCCCGGATACGGAGTTTCCCGCAGCCGCCGCAGGTCACATGGTTCAGAGACGGCAGGAAAATCCCACCCAGCAGCCGCATTGCCATCACACTGGAGAACACGCTGGTGATTCTGTCAGCGGTGGCGCCAGACGCTGGACGATACTACGTTCAGGCTGTGAACGACAAAAACGGGGAAAACAAGACCGGCCAGCCCATCACACTGACCGTGGAGAaTGTTGGTGGTCCAGCTGACCCCATTGCCCCTACCATCGTTATTCCACCCAGGAACACCAGTGTTGTTTCTGGGACGTCTGAGGTCACCATGGAGTGTGTAGCCAATGCTAGgccATTGATAAAGCTGAGTATCAGTTGGAGGAAGGATGGTGTTCCGGTTCGCTCTGGTCTGAGTGATTTTAACCGCAGGTTGACGGTTCTCAGCCCCACTGTGGGTGATTCAGGGTTCTATGAGTGTGAGGCAGAGCTGAAGAGCAGCAGTGTGCCGTCTGTTAGCGCTGGAGCATATCTGCATGTGCTGGAGCCCCCGCAGTTCGTGAAGGAACCAGAGAAGCACATCACCGCTGAGATGGAGAAGGTGGTGGATATTCCCTGCCAAGCACGAGGTGTCCCCCAGCCTGATATAGTGTGGTATAAGGATGCAGTACCTATAAATCCAGTGCGGTTGCCGCGGTATCGCGTGCTGGCCGGTGGGAGCCTGCAGGTTAACGGGCTGCTGCCGGATGATACGGGGATGTTCCAGTGTTTTGCTCGCAATGAGGCCGGAGAAGTGCAGACCAACACCTACCTCGCCGTCAccagCATTGCCCCGAACATCACAGCTGGTCCGTCAGACAGTACTGTGATTGATGGAATGTCAGTTATTTTACACTGTGAGACGTCAGGAGCACCGCGGCCTGCTATCACTTGGCAGAAAGgCATTGCCCCGAACATCACAGCTGGTCCGTCAGACAGTACTGTGATTGATGGAATGTCAGTTATTTTACACTGTGAGACGTCAGGAGCACCGCGGCCTGCTATCACTTGGCAGAAAGGTAagATGATGACCAGaagctctatctctctctcttcctctctctctctctctctctctgcagctcgTACTCGGATCACCACTCCTCCTCAGGATCAGAGTGTTATTAAGGGAACCAAAGCCACACTGACTTGTGGAGTGACCCATGACCCCAGTGTGAGCGTGAGGTTCGTATGGGAGAAGGATGGACAGGTGATGAATCCAAAGTCATCGCCACGGTTACGGCTGGACGGTAACGGAACGCTGCATATTTCCCAGACATGGTCAGGTGACATTGGGACCTACACCTGCAGAGTAACCTCAGTGGGAGGAAATGACTCCCGCTCTGCACACCTGAGAGTCAGGCAGCTGCCGCATGCTCCAGAGAACCCGAGTGCAGTTCTGAGCTCCACAGAAAAGAGGTCGATTAACCTGACCTGGGCCAAACCATTTGATGGGAACAGCCCGCTGATCCGTTACATGCTGGAGGTGTCTGAGAACAATGCTCCGTGGATGATTCTGTTGGCTAATATTGAGCCAGAATCCACAGCGGTGACGGTGAGTGGACTGATCCCGGCGAGGTCCTACCAGTTCCGCCTGTGTGCTGTAAACAACGTGGGGAAAGGACCATTCAGCAAGGAGACAGAACGGGTCTCTCTCCCAGAGGAACCCCCCAGTGCCCCCCCTCAGAATGTCATTGCCAGTGGCCGAACCAACTCCTCCATCATGATCCAGTGGCAGCCTCCCCCTGAGAGCCAGCAGAACGGCGTGCTCCGAGGATACGTCATCCGCTATCGTCTAACGGGTCTACCAGTGGACATCCAGTACAAGAACATCTCCAACCCAGATGTCACCAACCTTCTCCTAGAAGACCTCATCATCTGGACCAACTACGAGATCGAGGTGGCGGCGTATAACGGAGCTGGCCTCGGGGTCTACAGCCACAAGGTTACAGAGTGGACGCTTCAAGGAGTTCCCACTGTTGCTCCTGGGAATGTTCAAGCTGAAGCTGTGAATTCCACCAGCATCCGTTTCACCTGGGCAGCTCCCAACCCTCAGTTCATCAACGGCATCAACCAGGGCTACAAGCTGCTGGCATGGGAGCCGGGTCAGGAGGAGGAGGTTACGATGGTAACAGTCCGCCCAAATTTCCAGGACAGTGTTCACGTGGGCTACATCAGCGGACTGAAGAAGTTCACTCAGTACTACACCTCAGTGCTGTGCTTCACCACGCCGGGCGACGGCCCCCGCAGTGCCGCAAAGAGGATACACACACATGAAGACAcTCCAGGAGCTGTGGGTCATCTAAGTTTTACAGAGATCCTGGACACGTCTCTGAAAGTCAGCTGGAGAGAACCTAATGAAAAGAACGGCGTTCTCACCGgttaTCGGATCTCATGGGAGGAGTATAACCGCACCAACACCCGTGTTACACACTACCTCCCCAACGTCACTCTGGACTACAGAGTTACAGGACTGACCGCTCTGACCACTTACACCATCGAGGTGGCGGCAATGACCTCTAAAGGCCAGGGTCAACTCAGTTCATCCACCATATCATCAGGAGTACCACCAGAGCTTCCCGGTCCACCGACTAATTTAGCAATCTCCAACATCGGCCCGCGCACCGTCACGCTGCAGTTTAAACCGGGCTACGACGGAAAAACCTCCATATCTCGCTGGCAGGTGGAGGCCCAGATCAGTGTGGTGGGAGAGAATGAGGACTGGGTGATGGTTCACCAGCTGGCTAATGAACCTGATGCCCGCTCACTGGAAGTGCCTGCTCTAAACCCCTACACCTTCTACAGGTTTCGCATGCGTCAGGTGAACATCGTGGGCACCAGTCCTCCCAGCCAACCTTCACGAAAGATCCAAACCCTACAGGCTCCTCCTGACATGGCTCCAGTCAATGTGACCCTGCGGACAGCCAGCGAGACCAGCCTGTGGCTCCGATGGGTGCCTCTGCCAGAGTGGGAGTATAATGGTAATCCAGAGTCGGTGGGCTACAGGGTTCAGTACAGTTGGACCGGCCCACAAGCCAAAGCCCTAATCCACCGGATTCCTGACCGCCTGGAGAGGGAGTTTACTATAGAGGACCTGGAGGAGTGGACAGAGTATGAGGTTAAAGTTCAGGCCATCAATGGAATCGGGGCTGGACCTTGGAGCCAGCCCGTACGAGGACGCACCAGAGAGTCTGtTCCCTCTTGTGGACCCACCAACGTCTCGGCCTTCGCCACGACCTCCAGCAGTATCCTGGTGCGCTGGTTCGAGGTTCCTGATCCAGACAGGAATGGCCTCATTCTCGGCTATAAGGTCAGCAATGCTGAAATTAAtgaaaagtattgggacacctgctcatttaatGCTTCTTTTATTCCAAATTCACTGGTTATCAACAAGAATGTTAGTTGGGtgaggatgttggatgatcaccactccACCCATCTCCTATCTCTCCCAGTCAAAAGTACCTATCAGATCACATATCGCCTCAACTCCACCAATAGCAACACGGCAACGGTGGACGTATTGAACCCCAGCGCTCGTCAGTACACGGTTACTGGGCTTAAACCAGAATCTGTCTACGTATTCCGCATTACCGCTCAAACACGCAAGGGCTGGGGGGAGGCGGCGGAAGCCCTGGTGGTCACCACTGAGAAACGAGCTCGACCCCAGCCCACCAGTCGTCCCACAGTGCCGCAGGAGAACGTACAAGCACGCAGTGTCCTGCTTTCCTGGGAACCCGGCAGTGACGGTCTCTCTCCGGTCCGGTATTACACGGTGCAGGTCCGAGAACTCCCCAGCCGGAACTGGACCGTCCACTCAGCATCCGTCAATCACGACTCAACATCGTACATCGTGGACAGGCTGAAACCCTTCACCTCCTACCAGTTCCGAGTGAAGGCCACTAATGATATTGGGGACAGTGAGTACAGCGAGGACAGCGAGGCTATAACCACCCTGCAGGATGCTCCAGATGAATCTCCCATTATCCTCTCTGTCACGCCACATACCACAACCTCTGTTCTGATTCGCTGGcagGCCCCAGCAGAGGAGAGGATAAACGGGATCCCACTGGGTTTCCGTGTCCGGTACCGAGAGCTGCTGTATGACCGTCTACGCAGCTTCAGCGTCCAGCCCATCAACAGCCCATCTACCAGCTGGGCCGAACTCACCTctcCATACAGTATCCGCAACCTCAGTGACCCCTCTATCACCCAGTATGAGCTGGAcaACCTATCCAAACACAAGCGTTATGAAATCAGACTGAGTGTGTACAACGCTGTGGGGGAGGGACCAACCAGCTCGCCACAGGAAGTGTTTGTGGGTGAAGCAGTGCCAACTGCTCCTCCCCAAAACGTGGCCATCCAATCATCTACCGCCACACAGCTTGACATCACATGGGACCCACCTCCATTGGACACTCAGAATGGAGACATACAGGGCTATAAGATTTATTTCTGGGAGTTCCAGCGTAAGAACGAGACAGAGAAGCTGAGGACTCTCTTCCTGCCTGAAGGAGGGGTCAAGCTGAAGAACCTGACGGGCTACACCACCTACATGATCAGCGTCGCCCCCTTTAACGCAGCTGGAGATGGGCCTCGCAGTGCCCCCACAAGGGGGCGTACTCAGCAAGCTGctcccAGTGCTCCAAGCTTTATCCACTTCAGTGAACTCACCACTACATCTGTGAACGTGTCCTGGGGTGAGCCGGTGTTCCCCAACGGAATCCTCGAGGGATATCGCCTCATCTATGAGCCCTGCACTCCTGTTGATGGAGTCAGTAAGATAGTGACGGTGGATGTGAAGGGAAGCGCCCCcctatggctgaaaattaaaGACTTAGCCGACGGGGTTACTTACAACTTCCGCATCCGTGCCAAAACCTTCACCTACGGGCCGGAGGTGGAGGCCAACATCACCACTGGACCTGGAGAAGGTGCCCCAGGACCCCCTGGTGAACCGTTCATATCTCGTTACGGCTCTGCCCTCACCATTCACTGGACTAACGGTgatcccggacgagcccccaTCACGCGATTCGTCATTGAGGCCAGACCTTCTGATGAAGGTTTGTGGGATATCTTGATCAAGGATATTCCTAAGGAAGTGACGTCATACACGTTTAACATGGACATCCTGAAGCAGGGGGTCAGCTACGATTTCAGAGTCATCGGAGTCAATGACTATGGATACGGATCGCCAAGCCAACCGTCTCCGTCTATTTCAGCCCAAAAGGTGGCACCATTTTACGAGGAGTGGTGGTTCCTGGTGGTGGTGGCGTTGGTCGGCCTTATCTTCATCTTGCTGCTGGTCTTCATCCTCATCATTAGAGGCCAAAGCAAGAAATATGCCAAGAAATCAGACTCAGGCAGCAACTCCAACTGCAAGTCTCTGACTCATGGAGAGATGGTCAGTCTGGACGAGAGCCGATTTCCTGCTCTGGAGCTGAACAACCGCCGACTGTCCGTCAAAAACTCCTTCTGCCGCAAGAACGGCGTCTACACCAGGTCTCCCCCAAGGCCGAGTCCTGGTGGGCTGCACTACTCTGATGAAGACATCAGCACTAAATACAACGACCTGATTCCAGCTGAGAGCAGCAGCCTGACCGAGAAACCCTCTGAGATATCAGACTCACAGggaaGCGACAGCGAATACGAAGTGGAACCGACTCAGCAAAAGACGCACTCCTTCGTTAACCACTACATCAGCGACCCCACCTACTACAACTCATGGCGCCGTCAACAGAAGGGCATTTCTCGGGCTCAGGCCTACAGCTACACCGAATCCGAGTCCGGAGAGGCCGAGCACACCGCCGTTCCCCCGCCGCTGCCCCCGCTGCCCccccagcctcagcctcagccccAGCCTCAGGTCCAGGTCCCACCGCAGACCCTGAGCCAGAGCCAGGCCAGCCTCTTTAGGCCCAAAGGCAGCCGGACTCCTACTCCATCCCAGCAGAGCGCTAACTCGCCCAGCCAGCAGGGGCCGCTCTACCGGCCCCCCAGCAGCCTGGCCCCTGGCCCGAGACCACCCATCGCTGGATTTTCTTCTTTCGTCTGATTGGATAAATGAGAAAGGAAGATTTAAAGTGGAGGAGGAGGGGCCTGTCCTGCTCTTTTCTCCTCCCAAAACAAGCCTCCCAAGCCTAATTTGTCTAATGTGTCTCGATTGGAATGCCAACAAACATCAACAGCAGCtagatatttcttttttttcttttataatgtcgattttctttgtttttcttgctttgagttggatttttttttattttg

Function

GO: NA

KEGG:

id description
K16353 SDK; protein sidekick

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47939 lncRNA upstream 123183 9706049 ~ 9706302 (+) True G35609
TU47882 lncRNA upstream 374668 9454482 ~ 9454817 (+) True G35554
TU47880 lncRNA upstream 375317 9453869 ~ 9454168 (+) True G35552
TU47859 lncRNA upstream 400107 9424975 ~ 9429378 (+) True G35539
TU47847 lncRNA upstream 423275 9371570 ~ 9406210 (+) True G35533
TU48093 lncRNA downstream 98039 10471380 ~ 10473578 (+) True G35744
TU48095 lncRNA downstream 99539 10472880 ~ 10473578 (+) False G35744
TU48099 lncRNA downstream 113774 10487115 ~ 10488053 (+) True G35748
TU48160 lncRNA downstream 360437 10733778 ~ 10734007 (+) True G35794
TU48176 lncRNA downstream 474546 10847887 ~ 10848371 (+) True G35810
XM_022669066.1 mRNA upstream 561889 9220731 ~ 9267596 (+) True LOC103043335
XM_022669065.1 mRNA upstream 621801 9177238 ~ 9207684 (+) True LOC103022911
XM_022669063.1 mRNA upstream 621801 9177273 ~ 9207684 (+) False LOC103022911
XM_022669064.1 mRNA upstream 621801 9185299 ~ 9207684 (+) False LOC103022911
XM_007235442.2 mRNA upstream 800330 8994443 ~ 9029155 (+) True LOC103023541
XM_022669074.1 mRNA downstream 11671 10385012 ~ 10424245 (+) True cdc42ep4
XM_007240714.3 mRNA downstream 63982 10437323 ~ 10441938 (+) True LOC103039374
XM_007240718.3 mRNA downstream 103049 10476390 ~ 10485798 (+) True trim65
XM_022669432.1 mRNA downstream 374296 10747637 ~ 11001550 (+) True dock1
XM_015608531.2 mRNA downstream 667357 11040698 ~ 11042893 (+) True foxi2
TU47135 other upstream 2925488 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 3098061 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 3165898 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 3168234 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 5651402 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 100033 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 100033 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 621020 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 621020 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 1428117 11801458 ~ 11802204 (+) True G35903

Expression Profile