RNA id: XM_022669435.1


Basic Information

Item Value
RNA id XM_022669435.1
length 1835
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC103033657
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15772958 ~ 15778847 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTTGTCCTTATCGCTGATGATGAGGGTCACAGTTTTGTTCTAATGAACTATGGACCCCTTCCTGCAGACCAACAGCCCTGGATGGCTGGCTATCAGACTAAGGACAACACGCATCAGTACATCATTCAGACAGCCAGTACCTCTGACCTGACCACAAGCACCAATGTCGGAATACCCGGTCGCTGGGCATTCAGTGTTAATGATCCCTTTCAGCTGTTCTTTCCTATTCCACCCTCTGCTGTTCACCATGCTGTTACCAGTGATGGCTATTATGCAGAGATCCAGCTTGACCATAAATTCTCCTACTTTGGAAAAGATCATGAGAAACTATATctcAGTATGGATGGATTCCTCTCTTTTGAACCTCTCTCCTTTGATGGCTTTGCCCTAAATGTGAACAAAGACATCATCGCTCCGCTGTGGACCGACATTGACACTCACACCAGAGGAGACATTTCCTACACACAAGCCACAAACGGCACTCTTCTTAAACAAGCTTCAGATGAAATAAACCGCATGTTTCCTGGGACAAGGTTCACTGCTTCCTGGGTTTTTGTCGCCACCTGGGAGAAGATGGAGTTTGAACCTGATACAGGGGAGGTAACTTTCCAAGTGGCCCTGGTCTCCGATATTGATAGTGATGTTTCGTTCATCATAATGAACTATGGCAGCATTCCTGATGATCCAGAGTCCTGGATGgcTGGATATCAGACAGAGGGCAACAAACATCAATACCGCATTCAGGCTCCCAGTACCTCTCAGCTGTCCAAAACCTCTAATGTTGGAATACCTGGCCGCTGGGCTTTCCGTGTTGATGCCTGTTCAGCTGTGAACTGCACTGCGAGAGAAGAGTGCAAGGCAAGAAGTGGAATTTATGGCTGTGCCTGTGCGAACAACAATCCAAGATTTAATGCTGCcacttttgATGCCTACAACTACTGTAACAGCAGTTCTGGGGTGCTGTCACTCTCTCGCTGTGAGCTCTTCGAGGCTGGATTTCCTTCAGACTTCCTTCACCTCAATGATCCTAGTTGTGGAGGGGATATCCAAGATGACAGAGTGGTGTTCACTTTCGACAACAAGTTCAGGATCTGTGGCACAACAATGCAGAGTAACTCAACACACTTCATCTACGAGAACACTGTTCGGGTGGCAGGAGGTGTTTCTTCAGGTAGTGTAATCAGTCGTGACAGCTGGCTGGACATGAAATTCTCCTGTGTGTATCCACTCATCCAGAGCATCTCTATGTCCATGTCGATCCACGCCTCGGGAAGtgttgtgtCCAAAATACTGCCAGGTACTGAGAGCGCATATCAGCTCCGTCTGGTGACCTACTCCGATTCTTCATTCATTACTCCCTATTCCGGAAATATTACAATTGAAGTAAACCAGCAGGTCTTCATAGCTGTGGAGGCTGATGGAATTGACAGTTCACAGTTTGCTACTGTGCTGGACAGCTGCTGGGCCACTCCCTACAACGACATCAACTATCCTGTTCGCTGGGATCTGATCATTAATGAGTGTCCTAATGAGAAAGATGGCACAGTGGATGTGCTGCAGAATGGAATCTGGACAGCCAGTCACTTCTCTTTCAGGATGTTCACCTTCACTGGCATTTCTAACAACATCTTCCTGCACTGTCAGGTGCACCTGTGCCCGCGGATGAGTGGTCAGTGCTCTCAGCCATGTAATAAAAATGACGACGATGATCAATTCAGAGGAAGACGTCGCAGATCTGTGGACTTCCACGACAAAGCTTCTATCAGCATGAGCTTCTAACTCTCTGGCCCTTTGAAACCTCTGTTTGTGTAACATGGCCTAgaccaggggtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49413 lncRNA downstream 11350 15755613 ~ 15761608 (-) False G36677
TU49416 lncRNA downstream 11350 15755613 ~ 15761608 (-) False G36677
TU49403 lncRNA downstream 11775 15747400 ~ 15761183 (-) True G36677
TU49417 lncRNA downstream 12186 15755756 ~ 15760772 (-) True G36678
TU49375 lncRNA downstream 93652 15608091 ~ 15679306 (-) False G36664
XR_002649904.1 lncRNA upstream 12250 15791097 ~ 15795369 (-) True LOC111192406
TU49420 lncRNA upstream 22183 15801030 ~ 15801264 (-) True G36681
TU49434 lncRNA upstream 40469 15819316 ~ 15835494 (-) True LOC111192407
XR_002649905.1 lncRNA upstream 40567 15819414 ~ 15835522 (-) False LOC111192407
TU49542 lncRNA upstream 84435 15863282 ~ 15864264 (-) True G36754
XM_022669182.1 mRNA downstream 3489 15746284 ~ 15769469 (-) True LOC103024156
XM_022669183.1 mRNA downstream 3490 15746284 ~ 15769468 (-) False LOC103024156
XM_022669184.1 mRNA downstream 3490 15746285 ~ 15769468 (-) False LOC103024156
XM_007255138.3 mRNA downstream 35883 15723259 ~ 15737075 (-) True LOC103025516
XM_022669179.1 mRNA downstream 161536 15582625 ~ 15611422 (-) True LOC103026344
XM_007255130.3 mRNA upstream 58258 15837105 ~ 15840516 (-) True LOC103023526
XM_022669186.1 mRNA upstream 62546 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA upstream 62546 15841393 ~ 15851677 (-) True LOC103023209
XM_022669187.1 mRNA upstream 95512 15874359 ~ 16026122 (-) True ank3
XM_007255123.3 mRNA upstream 417566 16196413 ~ 16208914 (-) True LOC103021447
TU49397 other downstream 3429 15755613 ~ 15769529 (-) False G36677
TU49415 other downstream 3429 15755613 ~ 15769529 (-) False G36677
TU49409 other downstream 3467 15755613 ~ 15769491 (-) False G36677
XR_002649883.1 other downstream 14095 15758390 ~ 15758863 (-) True LOC111192378
trnal-caa_19 other downstream 816201 14956645 ~ 14956757 (-) True trnal-caa_19
TU49443 other upstream 58258 15837105 ~ 15840485 (-) False LOC103023526
TU50113 other upstream 1237281 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 1316398 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 1400531 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1595337 17374184 ~ 17381597 (-) True LOC103024241

Expression Profile