RNA id: XM_022669444.1


Basic Information

Item Value
RNA id XM_022669444.1
length 1137
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC111192421
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19851884 ~ 19858626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACACCTCACTGCGCTCCTCTCCTCACCATCTTCACCTTGAGGATTCTCCACACCTCGTTCCAGACTGTTTCAGGAGaagcagacacacacatgccTCCTGAGCCAGAAGTCTTTAAGCAGCTCAGCTGGAAGAATCTTCATCATCTGCAGAAGCTGCAGAGCAGTGAGCTGCATAGTAAAGTGCCTCAGTTCATGATGGATCTCTACGCCGCCGCGGCCGGATCAGGCAGCATTGTACGGGAGCCGGACGGGCCGGACGGGAACGTGGTGAGGAGTTACGCAGGACATTCAAACGGGGCATTTCACTATTTTAACCTCACATCGTTTAGCCAAGGGGAAAAGGTCATCAGAGCAGAGCTACGGTGGTTTCGTCATGCACAGCCATTTTTTATGGGGCATCATTTTTATAAAGTGGATCTGTACGAGGTGCTGGATGGCAGAGTAAAACCGTGGAGAGGAAACCTCATAACATCAAGACTGTTGCCCATGAACACCACCGGCTGGGAGGTGTTCAACATCACTAACACGGCAACCAAATGGATTCTCAACAGCGGCACAAATAACGGCCTTCTGCTCGTCTCAACTTTACCGTCGGGTCAGTGGTTTGAGGCTAGTGTGCAAACAGGAGGAGAGACAAAGCCAGAAGAAAATGATGCTTATTTGGTTATCTACTCAGATGATGGTCGCAGAGGCTCAGGTATGGGTCAGAGCAGCTCATCACCTCTGGACTTGGTCCTGGAGTCCATGATTACCCACTGGACCGCGGGGCGTATACGTAGGAGCACCCACCAACCTCCACCAGACCACAAGCCGTTCACAACATGTCAGAGAGCCCCGCTGTACGTGGACTTTGCTAAGATCGGCTGGTCCGGGTGGATAATATCACCCAGAGGCTACAACGCCTACCAGTGTGTGGGGTCCTGCCCGTTCCCTCTGGGTGGGAGTTTAAGAGCGACAAACCACGCCATCGTTCAGTCTATAGTGGACGCTCTGAAACTCTCCAGCAAGGTGGAGCAGCCATGCTGTGTGCCGGATGTGCTGCACCCGATAAGCCTGCTGTACTTCGATGATGAGGAGAATGTTGTACTTAAACAGTATGATGACATGGTGGCTGGTAGCTGCAGCTGCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51154 lncRNA downstream 81 19851544 ~ 19851803 (-) True G37929
TU51153 lncRNA downstream 412 19851247 ~ 19851472 (-) True G37928
TU51152 lncRNA downstream 2564 19848873 ~ 19849320 (-) True G37927
TU51145 lncRNA downstream 50637 19800948 ~ 19801247 (-) True G37920
TU51146 lncRNA downstream 51071 19800560 ~ 19800813 (-) True G37921
TU51161 lncRNA upstream 117882 19976508 ~ 19976726 (-) True G37934
TU51163 lncRNA upstream 155520 20014146 ~ 20014354 (-) True G37936
TU51166 lncRNA upstream 183393 20042019 ~ 20042337 (-) True G37939
TU51168 lncRNA upstream 189818 20048444 ~ 20048668 (-) True G37941
TU51188 lncRNA upstream 332782 20191408 ~ 20191686 (-) True G37953
XM_022669422.1 mRNA downstream 26293 19818574 ~ 19825591 (-) False c4h10orf128
XM_022669421.1 mRNA downstream 26293 19818574 ~ 19825591 (-) False c4h10orf128
XM_007233572.3 mRNA downstream 35703 19802002 ~ 19816181 (-) True LOC103041897
XM_007233570.3 mRNA downstream 71389 19741133 ~ 19780495 (-) False LOC103041296
XM_015601373.2 mRNA downstream 94029 19741134 ~ 19757855 (-) True LOC103041296
XM_022669325.1 mRNA upstream 653045 20511671 ~ 20679431 (-) True slc39a11
XM_022669327.1 mRNA upstream 876677 20735303 ~ 20781329 (-) False LOC103037418
XM_022669326.1 mRNA upstream 876677 20735303 ~ 20781327 (-) True LOC103037418
XM_015601189.2 mRNA upstream 925303 20783929 ~ 20797947 (-) True cops3
XM_007232854.3 mRNA upstream 1008174 20866800 ~ 20869080 (-) True rasd1
TU51149 other downstream 26232 19818268 ~ 19825652 (-) True c4h10orf128
TU50715 other downstream 1216786 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 1278708 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 1533927 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 2055898 17789951 ~ 17795986 (-) True vps25
TU51712 other upstream 2014694 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 3606593 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 3824500 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 3976454 23835080 ~ 23960895 (-) False G38791
TU52519 other upstream 4518050 24376676 ~ 24385304 (-) False LOC111192423

Expression Profile