RNA id: XR_002649845.1


Basic Information

Item Value
RNA id XR_002649845.1
length 2648
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111192350
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3107202 ~ 3189436 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctctctctctctctctcaaaagtGTACCCCGCTACCCCTGAATTTTCACCCGCGACTGGATTTtaaaacaagcccaatttggtgGGAAAACCGCGAACATGGCAACCCTGACTGAACCAGAGGCAAACGAGTTTTCTCGCAGCATTTAACCCGTTGACTATGCCTCTTTTTTTGCACGTCTTTAAGGTACTTAAGGTGCTTACACAGCGAACGCGGTAGGAGAGGCGCGGCACGCTGACCCCCATAGGATTAAATTGTTTCTAGAGCGGTAGAATAGTGCGTCGCTGCCGCGGAGCAGAGCGGAACGCGGTGCGTTTCCCCGCACATAACCACACCTCTACCGCGCTACCGCTCACCGCGGTCAAAGTTCAACATTGTTCAACTCTGACCTCGCGGCAAGCGGTACCGCCATAGATACCGCGGCAGAAAACGCATGACGTGAACTCACGCGACCAGGGAGAAACTGTAGTCCAAACAACTATAAACACAGGCGAGGTACTAATATTAACGACTAGTGAACACCCTCAGGTGTACATCACTTCTCTACACTCATATAAAGATAACAGGAAGAAGATCAGAATCAGAGCTTTATTCTGAGgctgagagacagatacagatctACAAAACACCGCTCGCAGACGTGACAAGTTTTTAAAAACCCCGCCTGTTATCAACAAGCATACCGCATTCGGTATGTAAGCACCTTTATGCATAATTGGTGATGATGATTGACAGCTTACTCCACCTATAGGAGAAGAGAGGTAATAAACCAAACTCTCTGCCCAAACTGAGAGACCAGAGAGAGGAAACAAAAGGATAACAGATATTGCAAAAATATCGTTCCAACGTTGTTGACACCCAATTAAAAATTAGAACCGTTTCCACACCtctcaaattaaataatatatttttatttgtattatatacgTTTGtagcatttacaaaaatgtcTGTCATTTACTCAACCAAAGCAAGTGTCATAGAGCCTAAAGTCAGTTTACTTTAATCCACCACTTCTAGTAAAACACAGTCCCCAGAGTTTACCGTTGAAGATTTTTAAACAATGCAAGAACCCGTGgtgaagaaaaagaacaaagacaATATATGTATTATGACCAGAGCCTACCTGGAATCATAAGGAGCAAGGCAGACCGTGAGCCAATCCATCACTGGCTACCACAGACACTGACTGCTTCTGGCAGATTCTGCTGAATGTCTAACGAAAGAAGCTTTTGCCCTCGCCTGACAGTCTGCAGTTCACACAGCATTTATCTTCATGACACTGAAGTCAGCGATGCCTCTGCGCCTGATGAGGATGGGTATCAGGTAAGAGAGGTCGAAGATATAAGATACTCTGGATGAGAATCTTTTTTGACTGCTCCTTTCACATTCACAGGACCAGGCTGTGAATCGACCTACTTACCTTTTCACATAAGCTTGACTTCAGTGAGAGAAATGGTCTGTAACATCCTTTGATAAAAGTCAGGGAGCTGAAGGCATTTTGTGTAGACTAGCTTAAGTTTGAAACTTCACCATTGAGCTGAATACTCAAAtgatttattcatgtttatgcTTCAGATTTGGACAGAACTGTAGACTGGTCATGAAAATTGTTTGCCCAGAGATTTCATTAGCCTGCGCTGCAAAAACAAACATGCTCTTTTCCCAGTTTTTCAAACacagtaccaaaaaaaaaatgctgctgactatatacatatattctgtttttaaaacagtgaaGCATTATACTCTCAACTTACAACAACACTATGAGGTAGCTCAGTGACACAGCCAAACATGATAACATCTGCAAAGTGGCGTATTGGAGAGAACTACCCTTGACATTTCTTTGGCTTGAACGCACTTACACTGGGAATTACATGGGAATTATGTTGTAATTCTGAACTAGACTGGAATTGATGTTTTTGGCGTGATCATACATATCTGATCCATATTGTTTTGATCCTGCTTGGAGGAAACAATCCCAGTGGACAGTTATAGCTTAGTTTCCAGGGATGATAATTGatgataattatttaatttgatgAGAGTGGGTTTGAAAGGAAGACATGGAAGACAAATTGTCAAAATGCCAGTGTTTGCTTTGCTCTTACAGTGTCATTCAGCAGCCCCAGCAGGATTCCAAGAACTGTTATTACAAAAACAACTATAAaatcagccatttttcattcatCAGGGTGAATTCTTAACTACATTTTTCAGATAAAACAACTAGAACAACTTAAATTAATTGCAGAAACGAATACACCCTACATGCAATAAATTGTCTACTAGTAAATGCTCTGGGGCAAAAATTTGGGATAGCAGACAAAATGAGTCTTAGAATATGCCTGGGTCCTcattattttcaataaacataTCAAAAGATAGACACTTGATTACAGTCCCTATTATTTGtgattgattatatatatacaccaaacatgcacaacattatgaccagctccttgtttctacacccataaTCAATTTTGTCAGGTTCGTTGAACATGTTTAACtttgtagtcctgtatctgtttctctacatactttattattttcttcctttcaccctgttctttaatggtcggAACCCCATAGGATAGAACCActacagagcaggtattatttgtg

Function

GO:

id name namespace
GO:0008865 fructokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45809 lncRNA downstream 21796 3060369 ~ 3085406 (-) True G34036
TU45696 lncRNA downstream 504013 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA downstream 504013 2575033 ~ 2603189 (-) False G33944
TU45689 lncRNA downstream 563091 2515287 ~ 2544111 (-) True G33939
TU45659 lncRNA downstream 739462 2362350 ~ 2367740 (-) True G33910
TU45895 lncRNA upstream 202193 3391629 ~ 3399113 (-) True G34101
TU45962 lncRNA upstream 539206 3728642 ~ 3728960 (-) True G34159
TU45973 lncRNA upstream 588464 3777900 ~ 3781741 (-) True G34166
TU46051 lncRNA upstream 650567 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 691146 3880582 ~ 3883412 (-) True LOC103038927
XM_007259140.3 mRNA downstream 469451 2624938 ~ 2637751 (-) True dhx8
XM_022668916.1 mRNA downstream 824218 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 825944 2276757 ~ 2281258 (-) True psme3
XM_007259113.3 mRNA downstream 973159 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 986819 2117540 ~ 2120383 (-) True snf8
XM_022669429.1 mRNA upstream 31911 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 151176 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 193339 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 214511 3403947 ~ 3532389 (-) True myo1d
XM_007259172.3 mRNA upstream 355997 3545433 ~ 3555219 (-) True LOC103046317
TU45650 other downstream 797873 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 911107 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 930143 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 1064928 2035094 ~ 2042274 (-) False LOC103022010
TU45985 other upstream 593689 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 593689 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 593689 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 593972 3783408 ~ 3789064 (-) False prr15l
TU45986 other upstream 593972 3783408 ~ 3789106 (-) False prr15l

Expression Profile