RNA id: XR_002649859.1


Basic Information

Item Value
RNA id XR_002649859.1
length 1219
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC111192359
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6292799 ~ 6296716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGttggttttaatttaaaatttacagaATAGACATGCAACATGCTCACTTAAAGCTTCAAAATTCACAAACTGGTTAAGACTAGTAGTTAGACATGGACTGTAGAAAAATGCTAGttaaagtgttttctttttaaggAGCAGCAAGATACCACCCTTTAGCTCTGCtgaaacaaactaaaaatgCCCACATACCCATGAGTCATGTTACCAAggaaaaactatatatttttcctgATGGTAAAGTAAAAGTGTGCAGTTTCTCTTGCCAGTATTTCAACAGTTAACTAACTTTTTTCTCTCAgtttattaactttaaaaaaaacatatattgtggGCACCATTGCTTAGGTGTAGTTTTTGTTAACACTTCTATTAAATCCACCTTTACAGCTGTAATCGCTGTTCAACAAACACTAACTGGCTTTGTTAAGTCAACAAAGATTGTTCACATATGTGTCACCCTatctaattttaacatttttgcattaacatctgttatgtttttgttcttttctagTGTTCATGAAGTGGCACTGCAAATTCTGCAGCACTGTTCTTCCTAAAAAAGGAAAGGATGTCTGAACCAGCAAAGCTGCGTGTGATTCTGGATGACCATGATATCCGAAAGCTGGTCTTGCCTTCAGGGATCCCTGGTACATGTCAAGGCCTGGAATTGATCATCAGAGAGACATTTCAGCTTCAGGGAAACTTCAGCCTGCTCTATAAGGATGCTGagtttggtgattttttttccttgacCACAACAGCAGATCTTAAAGACAAAGACACTGTCAAAGTAGTTCTTGTTGAGCCTTTGTATATAACTTTAACAGAAAGTGACCCAGCAGGTCCTGTCTCTACACTGTCAGATAGCTCTTCTAGTTCCTCATCTCATGCTTCATCTGCTGAAACCATAATTCTCTCTTCTCCGGAGAACCGTGGGAGATCACAACAGTGGCCATCACCATTTGAAATTCCAGAATTTGCTTATGATACAGAGCTGATTCTCGAGTCTGCTAATGCTGCATTTAGAAAGGATGGCACATGTCTGAACAATCCAAGCATCAAGTCTGATATTCTTGAAAAACTGGCTGAAAGGATCTACCAATTTTGTGCATATCCAACCAGTGAGCAGATATGCAATGTTGCTGAGGCATTAATACAAAAGCATCCATGCTTGAAGGAACCAGGTTCATTCTCTGGGTTGTATGGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46898 lncRNA upstream 5384 6285549 ~ 6287415 (+) True G34855
TU46879 lncRNA upstream 21845 6268428 ~ 6270954 (+) True G34837
TU46884 lncRNA upstream 26131 6266309 ~ 6266668 (+) True G34842
TU46883 lncRNA upstream 33985 6258553 ~ 6258814 (+) True G34841
TU46881 lncRNA upstream 34749 6255606 ~ 6258050 (+) True LOC103045604
XR_002649900.1 lncRNA downstream 15905 6312621 ~ 6322293 (+) True LOC111192400
TU46924 lncRNA downstream 15999 6312715 ~ 6322293 (+) False LOC111192400
TU46931 lncRNA downstream 69968 6366684 ~ 6368113 (+) False G34880
TU46930 lncRNA downstream 70034 6366750 ~ 6369281 (+) True G34880
TU46932 lncRNA downstream 70034 6366750 ~ 6368113 (+) False G34880
XM_022669011.1 mRNA upstream 37162 6246646 ~ 6255637 (+) False LOC103045604
XM_007259292.3 mRNA upstream 107560 6180824 ~ 6185239 (+) True LOC103024806
XM_007259273.3 mRNA upstream 139930 6149287 ~ 6152869 (+) True trub1
XM_022668974.1 mRNA upstream 290269 6000006 ~ 6002530 (+) True LOC111192358
XM_007259270.3 mRNA upstream 311582 5949544 ~ 5981217 (+) True vwa2
XM_007259300.3 mRNA downstream 217787 6514503 ~ 6541364 (+) True slc38a10
XM_022669014.1 mRNA downstream 217787 6514503 ~ 6541364 (+) False slc38a10
XM_007259299.3 mRNA downstream 217787 6514503 ~ 6541364 (+) False slc38a10
XM_022669015.1 mRNA downstream 220996 6517712 ~ 6541364 (+) False slc38a10
XM_007259298.3 mRNA downstream 250834 6547550 ~ 6553218 (+) True tepsin
TU46176 other upstream 2114716 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4235925 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4455223 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4904780 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 5170927 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 322954 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 322955 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 434238 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 605701 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4176658 10473374 ~ 10474792 (+) False G35744

Expression Profile