RNA id: trnal-caa_3


Basic Information

Item Value
RNA id trnal-caa_3
length 84
RNA type tRNA
GC content 0.56
exon number 2
gene id trnal-caa_3
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14952104 ~ 14952216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAgaatggccgagcggtctaaggcgccagactcaagttctggtctccgaatggaggcgtgggttcaaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49087 lncRNA downstream 75026 14832969 ~ 14877078 (-) True G36477
TU49046 lncRNA downstream 165351 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 173709 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA downstream 173709 14774681 ~ 14778395 (-) True G36428
TU49012 lncRNA downstream 246873 14704543 ~ 14705231 (-) True G36417
TU49167 lncRNA upstream 196187 15148403 ~ 15149356 (-) True G36542
TU49176 lncRNA upstream 247606 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 430296 15382512 ~ 15454810 (-) True G36632
TU49314 lncRNA upstream 440795 15393011 ~ 15397037 (-) True G36629
TU49337 lncRNA upstream 455244 15407460 ~ 15412008 (-) True G36634
XM_022669166.1 mRNA downstream 90321 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 154892 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669155.1 mRNA downstream 335482 14565938 ~ 14616622 (-) False wapl
XM_022669169.1 mRNA upstream 88318 15040534 ~ 15085022 (-) True med24
XM_022669170.1 mRNA upstream 142388 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 142388 15094604 ~ 15111090 (-) False LOC103031644
XM_007255143.3 mRNA upstream 588884 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 600375 15552591 ~ 15565917 (-) True smarcd2
trnal-caa_2 other downstream 151 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_1 other downstream 355 14951637 ~ 14951749 (-) True trnal-caa_1
trnam-cau_20 other downstream 1751866 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 1754329 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 2240559 12709808 ~ 12711545 (-) True G36074
trnal-caa_4 other upstream 92 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 296 14952512 ~ 14952624 (-) True trnal-caa_5
trnal-caa_6 other upstream 497 14952713 ~ 14952825 (-) True trnal-caa_6
trnal-caa_7 other upstream 698 14952914 ~ 14953026 (-) True trnal-caa_7
trnal-caa_8 other upstream 1102 14953318 ~ 14953429 (-) True trnal-caa_8

Expression Profile