RNA id: XM_022674425.1


Basic Information

Item Value
RNA id XM_022674425.1
length 1026
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC111193492
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 590183 ~ 593200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAACTCTCTAAAATATGAAGTCAGTGAAGTGTTAGTTCAGGGCTGACCGACACCATGAGGACTCTGCTGACTCTCTGCCTGATCATGAACCTCTGGATCACCTCTCTGGCTCTAAACTGCAGAGTGGTTCCAGGCAGTCTGAAGCAGATTGACGCCGGGAACGGTCAGGTGTTTGGAGTGAACTCAGCCGATGAGATCTACACCCTCTACAGTGGGGTATGGACAAAAGTTCCTGGATCTCTGAAGCACGTCAGCGTGGGACCTGCTGGAGTTTGGGGAGTCAGTGCAGGAGATTACATCCTAAACCTTCAGAGAGGGGATTGGGTTGTTGTCCGAGGCCTCCTGAAGCAGGTGGATGCCGGAGGATCGGTCTTCCCAGCCGGAGTCAACTCAAATGATGACATCTACTGCCTTCCTGCTGAAGGTAGCTGGATAAATATCCAGGGAAAGCTGAAGTACTACAGCTGTGGGTCTTACAGCTGCTGGGGGGTGAACTCTGCAGACAATATCTACATTATGAAGGGTGTGACCCCAACCAAGTGTGGTGGCTCTTTACAGTGGGAGCAGatagatggagctctttccaTGATTGAAGTTTCAACTGATGGAAAAGTCTATGGAGTCAATTCCAATGGAGATCTCTTTGAAAGggaaGGTGTTTCCTCAATCAATCCTGCTGGCACTAAGTGGCGCCAACTCCCATTGTACCAGAGAATAAAGCACGTTTCCTATGATGGCGGACACCTGTGGCTCATTACCTTAGATAACAGCATCTTGGATTGTACTGATGATCTTAATTAGcaattaagttgtttttttactcGTTCCCTGCTACATTGGAAATGTGGTCCCCCTCAGTGTAAACCACAACTTAAATAAAGATGAATGAGTGATGATGAGTCATTGATATTTAGACCTTACGTTGCCTGAAAATAAAGAGATATAATAATTTCTTCTCTGATAAACTGACAATTGATTATGCCTTGATTATTAAATCTGTAAACACATTGAAAAGTGTTATAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134334 lncRNA upstream 9446 580352 ~ 580737 (+) True G99588
TU134325 lncRNA upstream 14780 569657 ~ 575403 (+) True G99582
TU134317 lncRNA upstream 49712 535510 ~ 540471 (+) True LOC111193579
TU134301 lncRNA upstream 58096 530003 ~ 532087 (+) True LOC111193491
XR_002650555.1 lncRNA upstream 58098 530111 ~ 532085 (+) False LOC111193491
TU134344 lncRNA downstream 13180 606380 ~ 612000 (+) True G99596
TU134352 lncRNA downstream 38305 631505 ~ 631834 (+) True G99604
XR_002650557.1 lncRNA downstream 196906 790106 ~ 792100 (+) True LOC103024499
TU134387 lncRNA downstream 254999 848199 ~ 851469 (+) True G99623
TU134415 lncRNA downstream 303219 896419 ~ 896789 (+) True G99642
XM_007241223.3 mRNA upstream 41903 541945 ~ 548280 (+) False LOC103026069
XM_007241222.3 mRNA upstream 41903 543178 ~ 548280 (+) True LOC103026069
XM_022674983.1 mRNA upstream 49713 534029 ~ 540470 (+) False LOC111193579
XM_022674982.1 mRNA upstream 95275 487474 ~ 494908 (+) True LOC103036139
XM_015602640.2 mRNA upstream 130407 454872 ~ 459776 (+) True LOC107197104
XM_022674429.1 mRNA downstream 63468 656668 ~ 728123 (+) True LOC103043293
XM_022674461.1 mRNA downstream 141881 735081 ~ 757324 (+) True LOC103030233
XM_007238353.3 mRNA downstream 175809 769009 ~ 779862 (+) True mvb12a
XM_022674985.1 mRNA downstream 213814 807014 ~ 809445 (+) True LOC111193580
XM_022674442.1 mRNA downstream 221260 814460 ~ 829481 (+) False LOC103028614
TU134297 other upstream 93807 488023 ~ 496376 (+) False LOC103036139
TU134298 other upstream 93807 488023 ~ 496376 (+) False LOC103036139
TU134294 other upstream 107964 474660 ~ 482219 (+) True G99561
TU134475 other downstream 515285 1108485 ~ 1110592 (+) False ubl5
TU134509 other downstream 588227 1181427 ~ 1184269 (+) True G99710
TU134552 other downstream 704054 1297254 ~ 1298367 (+) False LOC111193582
TU135009 other downstream 1293898 1887098 ~ 1888900 (+) False LOC103047668
TU135109 other downstream 1418829 2012029 ~ 2015692 (+) False LOC103038569

Expression Profile