RNA id: TU135257


Basic Information

Item Value
RNA id TU135257
length 1066
lncRNA type sense_over
GC content 0.52
exon number 7
gene id LOC111193601
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2493761 ~ 2500431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCGAGTGCGGGTGAAGCTGTTCAGCAGGTCCAGTCCTGACTCTGAGGAGGAGGTGCGGAGCAAAGTGAAGAGACCCAATCACAGCTCTCCACAAGAGGGCGCTGTTCACCACAGCCAACCACAATCACCTGATCCAGAGTCGGTTGCACTCTTCCAAAGACTGAGTGGTCCAGGAGGAaatctgctcacacacacatccctgAGCCAACCGTCACTGACCAGCACCTGATTGGAGACTTCACATCATGTGCTTCCTGTGGAGCGTGTGGGTTATCAGGAGCTTCACTGTGTTTCTGCTCAGACTGTGGCGGGTCTGATCACTGCTCAGTTCAGCGCTGTGGTGGAAGATTTCCTCATCATAGACTGTCGGTACCCATACGAGTTTAAAGGAGGACACATTAAGGGAGCGGTGAACCTGTACACTGAGCATCAGATCCACCAAGCCTTCCTCCAGAGCTTCTCCAACTTCCAGACTTCCCCAGGAGCTCAGCAGGACCCTCGTAGTCCAGAGGCGGGCGCTGTGGGGGGAGTGCAGGGTCCGGGCAGTGGTGGATCCCGGTCATCAGCAGTATCAGGAGAGATTAAAGATGGAGGATCATCATGTCCCAGGAAGCTGATCGTTTTCCACTGCGAGTTTTCATCAGAGAGAGGACCACGCCTgtGTCAGTATCTGAGGGAGCTGGATCGAGCTGTAAATACTCAGAATTATCCTCTACTGCTCTATCCTGAACTCTACCTGCTGCAGGGAGGATACaaacacttctacacacactacccgGATCTGTGTGATCCCTGCAATTATGTCCATGCGTCATCAGGACTTCAGGGAGCAGCTTCAACGATTCAGCAGGAAAAAGGATCCGCATCACAGCAGACGGCCAATCAGATCACAGCAGAGGACGGCACGATTTTAACAGTGACCATCAGTCGGCCTTGTCCCCATCCCATCACATCGCATCATCacatcatattacattatagCTGTGTGTGCAGTGTCTGCTCTGTACTGTAGTGCTTCTGACAGACCTCACCTAATAAAGCTGGACGTGATGctctacctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135254 lncRNA upstream 663 2490799 ~ 2493218 (+) True G100216
TU135237 lncRNA upstream 58214 2432155 ~ 2435667 (+) True G100205
TU135176 lncRNA upstream 125317 2364101 ~ 2368564 (+) True LOC103026535
TU135233 lncRNA upstream 137845 2355327 ~ 2356036 (+) True G100202
TU135230 lncRNA upstream 148212 2345033 ~ 2345669 (+) True G100199
TU135261 lncRNA downstream 25126 2525557 ~ 2537407 (+) True G100221
TU135282 lncRNA downstream 83090 2583521 ~ 2584324 (+) True G100237
TU135290 lncRNA downstream 127255 2627686 ~ 2703276 (+) True G100240
TU135295 lncRNA downstream 129381 2629812 ~ 2633083 (+) True G100245
TU135313 lncRNA downstream 155200 2655631 ~ 2673061 (+) True G100249
XM_022674497.1 mRNA upstream 30496 2451401 ~ 2463385 (+) True avpi1
XM_022674495.1 mRNA upstream 78060 2401554 ~ 2415821 (+) True LOC103025604
XM_022674492.1 mRNA upstream 103902 2369956 ~ 2389979 (+) True khsrp
XM_022674493.1 mRNA upstream 103902 2369956 ~ 2389979 (+) False khsrp
XM_007229531.3 mRNA upstream 130312 2343622 ~ 2363569 (+) False LOC103026535
XM_022675014.1 mRNA downstream 4054 2504485 ~ 2506380 (+) True LOC103022670
XM_022674499.1 mRNA downstream 8105 2508536 ~ 2518926 (+) True exosc1
XM_022674505.1 mRNA downstream 110086 2610517 ~ 2625505 (+) True LOC111193505
XM_022674506.1 mRNA downstream 141656 2642087 ~ 2649000 (+) False tekt4
XM_022674508.1 mRNA downstream 274727 2775158 ~ 2916200 (+) True pkd1
XR_002650564.1 other upstream 30496 2451401 ~ 2463385 (+) False avpi1
TU135165 other upstream 157549 2333607 ~ 2336332 (+) True c12h19orf53
XR_002650559.1 other upstream 442386 2042863 ~ 2051495 (+) False LOC103031088
TU135143 other upstream 455555 2032906 ~ 2038326 (+) False LOC103031617
TU135109 other upstream 478189 2012029 ~ 2015692 (+) False LOC103038569
TU135287 other downstream 110113 2610544 ~ 2625462 (+) False LOC111193505
TU135297 other downstream 142090 2642521 ~ 2650150 (+) False tekt4
TU135303 other downstream 142090 2642521 ~ 2650150 (+) True tekt4
TU135308 other downstream 142090 2642521 ~ 2650150 (+) False tekt4
TU135382 other downstream 544196 3044627 ~ 3046637 (+) True G100300

Expression Profile