RNA id: TU135358


Basic Information

Item Value
RNA id TU135358
length 1211
lncRNA type inter_gene
GC content 0.56
exon number 7
gene id G100283
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2926659 ~ 2940177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAGGTTCTGGTCAGAGACGATTTTGGCTACTGTGGTGTCCACCAACCCCTCCAGATCTCTCCTGCACTGCAGAGTCACCAGGTTACTCTCGAAGTCCAGCGGCTTTATCAGCACCTCCACAAAGTTGAACTGGccCTTAATAGTGCCGAGTTTGTATTCCTCTCCGGAGTCGTTATAAACCACCACAACAAAGTCGTTCCCGATGTGTCGCTTCTTATTACAGCAGCTTTTATCACTCTCCCTGTTGGGCATCAGCGTGGCGATGTGGAAAATAGCCTGCATGATGTCATCATGCCAGCAGTAGGTGAACTCTCCATCGTCTGCGTATCTCCCGTGGTCCAGTCCACCCAGGAAGATCTGGTCAGGATCACAGTCCTTCAGGTGGATCAGTTTCCCCAGACCGGTCAGGAAACGAGCGTAACGGTTCGAGCCGTACTCATTCGACAGAATCGCCACCTCGTTATTCGCCTGTCCAGGCCCCACAAACACCACTCCTATTTTATGCGTGTCATACGGCGGCATCTGATCCAGCACTTTAACAGCCCGATCAATCAGCTCAGATTTAGGCAGTAGGAGGGGCTTGTTGGCCTCGTTGCCGAAGAAGGGTGAATGGTAGAGCTGTAGAAACACAAaaCTGGGGCTCAGTCCAGAGCTCTTCTCAGCGTTAGTCGTTCCTCCTCGGTTGTGATAAGAGTCCCGGTCTGATTTCCTCTCCCTCCGTGACGAGGGTGCAGAAACAGAGATAGTGTGCCCGCGGGGGCGATGCCCACTCGGAGATAGAGGCCCCTGCTGGACGCTCGGGAACTCCAGCTTCATCTTAGAAGCagaagaggaggaggtggagacgCTCGCTGTGGCACTTACACTCGGAGGACCTCCAGAACCAAGACCTCCTGCTGGACCAACAGACTCTCCTGCTCCTTCTCTCTCAACTGAGGCCTGGGTGGGCACGATCCTCCCCTCCACCGGGGTCCGGGACCTGGGGGCGTCTCCGTGCACGGCTCCTACAGCTTTAGCGTAGGCCTCGGGCAGGGTCTGCAGCTCCGGAGAGGAGCTGGACTTGTTGAGGGTTTGAGAGTGAGGGAAGGGGGGGTCCGAGTCCACAGCTCCGCTGGAGAAGGTCAGGGGGGGCTGATCGATGGGAATCCCACCTTCACTGACCTCCTCCAGGGTGGACTTCTCATCATCCTGactggaggtggaggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135355 lncRNA upstream 3192 2919479 ~ 2923467 (+) True G100281
TU135356 lncRNA upstream 7402 2918736 ~ 2919257 (+) True G100282
TU135334 lncRNA upstream 9231 2916603 ~ 2917428 (+) True G100265
TU135352 lncRNA upstream 37244 2886353 ~ 2889415 (+) True G100278
TU135351 lncRNA upstream 61791 2862630 ~ 2864868 (+) True G100277
TU135365 lncRNA downstream 51241 2991418 ~ 2997416 (+) True G100288
TU135388 lncRNA downstream 123776 3063953 ~ 3125580 (+) True G100305
TU135410 lncRNA downstream 174609 3114786 ~ 3117263 (+) False LOC103046164
TU135409 lncRNA downstream 242014 3182191 ~ 3200431 (+) True G100317
TU135488 lncRNA downstream 415401 3355578 ~ 3357876 (+) True G100377
XM_022674508.1 mRNA upstream 10459 2775158 ~ 2916200 (+) True pkd1
XM_022674506.1 mRNA upstream 277659 2642087 ~ 2649000 (+) False tekt4
XM_022674505.1 mRNA upstream 301154 2610517 ~ 2625505 (+) True LOC111193505
XM_022674499.1 mRNA upstream 407733 2508536 ~ 2518926 (+) True exosc1
XM_022675014.1 mRNA upstream 420279 2504485 ~ 2506380 (+) True LOC103022670
XM_022675015.1 mRNA downstream 57382 2997559 ~ 3004262 (+) True nthl1
XM_022674519.1 mRNA downstream 68684 3008861 ~ 3031715 (+) True slc9a3r2
XM_022675016.1 mRNA downstream 148476 3088653 ~ 3116925 (+) True LOC103046164
XM_022675017.1 mRNA downstream 202873 3143050 ~ 3149166 (+) True LOC111193603
XM_022675018.1 mRNA downstream 215041 3155218 ~ 3159534 (+) True LOC111193604
TU135297 other upstream 276509 2642521 ~ 2650150 (+) False tekt4
TU135303 other upstream 276509 2642521 ~ 2650150 (+) True tekt4
TU135308 other upstream 276509 2642521 ~ 2650150 (+) False tekt4
TU135287 other upstream 301197 2610544 ~ 2625462 (+) False LOC111193505
XR_002650564.1 other upstream 463274 2451401 ~ 2463385 (+) False avpi1
TU135382 other downstream 104450 3044627 ~ 3046637 (+) True G100300
TU135404 other downstream 218479 3158656 ~ 3209330 (+) True G100314
TU135422 other downstream 286579 3226756 ~ 3229366 (+) True LOC103023443
TU136173 other downstream 1309906 4250083 ~ 4267826 (+) True G100820
XR_002650570.1 other downstream 1688946 4629123 ~ 4645356 (+) False atg4d

Expression Profile