RNA id: TU136200


Basic Information

Item Value
RNA id TU136200
length 217
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G100834
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 4347552 ~ 4347768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTCTTCagtgtacgacaggatctgcagagcccagatgtatcaagccctgggccgatgacgggcctacgccaaagactctaatacATGAAATTGTTTCTATACGACTTTCACGAACATATACGTGTACTTGTTTCgcctacaaatattttgttcaaacattaaataattcaactaactaaatttgcttccggagtcgtaatagtagaaatgaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136198 lncRNA upstream 3814 4343370 ~ 4343738 (+) True G100832
TU136197 lncRNA upstream 13786 4333495 ~ 4333766 (+) True G100831
TU136194 lncRNA upstream 18474 4323773 ~ 4329078 (+) True G100829
TU136176 lncRNA upstream 63412 4265500 ~ 4284140 (+) True G100821
TU136167 lncRNA upstream 101052 4223076 ~ 4246500 (+) True G100815
TU136202 lncRNA downstream 13275 4361043 ~ 4362401 (+) True G100836
TU136203 lncRNA downstream 14834 4362602 ~ 4363005 (+) True G100837
TU136247 lncRNA downstream 22387 4370155 ~ 4370521 (+) True G100865
TU136249 lncRNA downstream 28274 4376042 ~ 4376329 (+) True G100867
TU136243 lncRNA downstream 75105 4422873 ~ 4423444 (+) False G100863
XM_022674552.1 mRNA upstream 59527 4282750 ~ 4288025 (+) True c12h1orf100
XM_022674547.1 mRNA upstream 111165 4219108 ~ 4236387 (+) False pus10
XM_022674545.1 mRNA upstream 111165 4219109 ~ 4236387 (+) True pus10
XM_022674546.1 mRNA upstream 111165 4219343 ~ 4236387 (+) False pus10
XM_022674541.1 mRNA upstream 287094 4011996 ~ 4060458 (+) False LOC103022119
XM_022674558.1 mRNA downstream 40388 4388156 ~ 4421174 (+) True LOC103041106
XM_022674563.1 mRNA downstream 159866 4507634 ~ 4624848 (+) True LOC103024921
XM_022674564.1 mRNA downstream 178366 4526134 ~ 4624848 (+) False LOC103024921
XM_022674565.1 mRNA downstream 281356 4629124 ~ 4644235 (+) False atg4d
XM_022674567.1 mRNA downstream 300679 4648447 ~ 4671336 (+) True LOC103025559
TU136173 other upstream 79726 4250083 ~ 4267826 (+) True G100820
TU135422 other upstream 1118186 3226756 ~ 3229366 (+) True LOC103023443
TU135404 other upstream 1138222 3158656 ~ 3209330 (+) True G100314
TU135382 other upstream 1300915 3044627 ~ 3046637 (+) True G100300
TU135308 other upstream 1697402 2642521 ~ 2650150 (+) False tekt4
XR_002650570.1 other downstream 281355 4629123 ~ 4645356 (+) False atg4d
XR_002650569.1 other downstream 281356 4629124 ~ 4645356 (+) True atg4d
TU136387 other downstream 738992 5086760 ~ 5091748 (+) True G100975
TU136980 other downstream 1934257 6282025 ~ 6286734 (+) True G101452
XR_002650572.1 other downstream 2607551 6955319 ~ 6997446 (+) False LOC103032856

Expression Profile