RNA id: XM_007246669.3


Basic Information

Item Value
RNA id XM_007246669.3
length 1423
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103042156
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7384757 ~ 7393225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAAGTCGTAAAGGTGACGTttgtgagagtgaaagagaaatgtagatgacagagagagagagcgagggagagacaAAGAAGCATCAGCTGTAATTCTTTCTCCCACACATACGTACATAGGTTATACACACTTCTCCTGATAGGTGATGTGTCTGGAAGTTCTGCATGCCTGTATCTTTAGGCACATCTGACTTCTTCTGCGTCTGGTGAAAGGTGGGAGATCGTCCATGGCGTCCTCTGTCTTCTTATCTTTCAGCATCATCTTCACCATCCTGCAGGGGCTAACACTCATAACCAGTGGAAATAGTAATGAAACTGAGTTGAACTGTATTCCAACTATCAAAGTTCCTCGCAACACAGTGTGGACAGTTTCAGAAAATGCAACCCTAAAGATCAACTGTTCTATTTTTACTGAACCCCACTGTTGGCAGAGCTTATTAGCCTCATGGTGCAGAATTAATGATGAAAACGAATGCCGACTAATGAATCAGTCCAATCACAGAGCAACAGAATGGAGgaatattactgaaaatcaACGGATGTTTATCCTGATTTTCTGGAACTTATCCAAGCAGGACGCTGGTCTGTACAGGTGTCTGACACATGCACCTGTATCTACTTCAGGCCATGCTATCAGTGTGAATGTGACAGAATACATTACACACTCTGAAGTcatacaaaatgaaaataagacAACAAATGGAACTCGAGAAGAGTCGTCAGATATGGCCTGGCTGTGGCCCTATGTGTACATCAGCAGTGGGATTATAGTGCTGGTCCTCACAGTGATTGTTGTGGCTCTGCTTCTGCTCCGGTGccgagGGTCAAAAGAGCGAAAACAGCAAATAGCTGAGAATCAGTTCAGTGTGGCCCACACACCTTCTTTTAGTCCACGGGTACGTAGCACCCTTCAACCTGGCAACACCCACAGTCTTCCACCACAGCTCAGTCCAACATCAGACCTCATCTACGGTAACGCTCCAATCAGAGCCTCATCTCAGAAAGACCGGCATTCCAGGGGCCATCCAGCCAATCACGCGGCCAAGCCGCGGCGGGGGCACGACCACTTCACTGAGGAGCTGGAGGACGAGGACAATCCACTGGTGTACGCCTCTCTCAATCACAAAGTGATGCCACGCCCACCAGTCAGAGTCACCCTGCCAGAGGAGACCTCTGAATACGCTGCCATCCGAGTCTCCTGagactttcagacttttgactgactgactgagaacagctttaaattaaagtgtaaagtgtaaaatatttaagaGCAGCTAGCCATCTACACCATATCAATTTATACTCTGTTGTTGTGAAATGCAAAAGATTGAgagaatgtattatttttttagaacttGTAAATCAAATGCTTTGTacataataatgattttttttattaaaaaaaaaacaattgtggGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137272 lncRNA upstream 2283 7378262 ~ 7382475 (+) True G101679
TU137269 lncRNA upstream 13361 7371071 ~ 7371397 (+) True G101676
TU137267 lncRNA upstream 15176 7369275 ~ 7369582 (+) True G101674
TU137246 lncRNA upstream 114615 7269806 ~ 7270143 (+) True G101656
TU137224 lncRNA upstream 209869 7174665 ~ 7174889 (+) True G101636
TU137394 lncRNA downstream 56688 7449913 ~ 7452365 (+) True G101767
TU137406 lncRNA downstream 103245 7496470 ~ 7498497 (+) False G101776
TU137408 lncRNA downstream 103512 7496737 ~ 7498497 (+) True G101776
TU137410 lncRNA downstream 104206 7497431 ~ 7499837 (+) False G101777
TU137411 lncRNA downstream 105368 7498593 ~ 7499837 (+) True G101777
XM_022674644.1 mRNA upstream 39694 7338167 ~ 7345064 (+) True LOC103041253
XM_007246665.3 mRNA upstream 65839 7294285 ~ 7318919 (+) True LOC103040938
XM_022675028.1 mRNA upstream 95638 7285492 ~ 7289120 (+) True pld6
XM_007246664.3 mRNA upstream 102919 7272558 ~ 7281839 (+) True LOC103040632
XM_022674641.1 mRNA upstream 187761 7190324 ~ 7196997 (+) True spp2
XM_007246674.3 mRNA downstream 42405 7435630 ~ 7443495 (+) True tpt1
XM_022674650.1 mRNA downstream 76118 7469343 ~ 7510405 (+) False pibf1
XM_022674648.1 mRNA downstream 76120 7469345 ~ 7538634 (+) True pibf1
XM_022674649.1 mRNA downstream 76120 7469345 ~ 7538634 (+) False pibf1
XM_007246677.3 mRNA downstream 149115 7542340 ~ 7560927 (+) True LOC103044305
TU137208 other upstream 238418 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 387312 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 1098024 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 2293010 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 2739402 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 1321614 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 1440615 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 3132452 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 3894644 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 6535840 13929065 ~ 13935667 (+) True G103376

Expression Profile