RNA id: TU137408


Basic Information

Item Value
RNA id TU137408
length 960
lncRNA type intronic
GC content 0.47
exon number 3
gene id G101776
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7496470 ~ 7498497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagcaaccacttagcaaccactttagaaatgaaagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcttagcaaccagttagcaacaccttagcaaccaccaggaaaatgttagaaactgcctagctacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccactttagaaatgaaagcaactgcctagcaaccacctggaaaacattagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacattagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccgcctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttaccaacaccttagcaaccattaggaaaacgttagcaactgcctagcaaccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137394 lncRNA upstream 44372 7449913 ~ 7452365 (+) True G101767
TU137276 lncRNA upstream 106978 7384851 ~ 7389759 (+) False LOC103042156
TU137272 lncRNA upstream 114262 7378262 ~ 7382475 (+) True G101679
TU137269 lncRNA upstream 125340 7371071 ~ 7371397 (+) True G101676
TU137267 lncRNA upstream 127155 7369275 ~ 7369582 (+) True G101674
TU137411 lncRNA downstream 96 7498593 ~ 7499837 (+) True G101777
TU137412 lncRNA downstream 362 7498859 ~ 7499837 (+) False G101777
TU137422 lncRNA downstream 4894 7503391 ~ 7564148 (+) False G101778
TU137419 lncRNA downstream 62953 7561450 ~ 7600202 (+) False G101778
TU137416 lncRNA downstream 63227 7561724 ~ 7610906 (+) True G101778
XM_007246674.3 mRNA upstream 53242 7435630 ~ 7443495 (+) True tpt1
XM_007246670.3 mRNA upstream 103512 7384757 ~ 7393225 (+) False LOC103042156
XM_007246669.3 mRNA upstream 103512 7384758 ~ 7393225 (+) True LOC103042156
XM_022674644.1 mRNA upstream 151673 7338167 ~ 7345064 (+) True LOC103041253
XM_007246665.3 mRNA upstream 177818 7294285 ~ 7318919 (+) True LOC103040938
XM_007246677.3 mRNA downstream 43843 7542340 ~ 7560927 (+) True LOC103044305
XM_022674651.1 mRNA downstream 210802 7709299 ~ 7770528 (+) True LOC103034778
XM_022674652.1 mRNA downstream 210802 7709299 ~ 7770528 (+) False LOC103034778
XM_015605166.2 mRNA downstream 210802 7709299 ~ 7770528 (+) False LOC103034778
XM_007246696.3 mRNA downstream 1042497 8540994 ~ 8543564 (+) False LOC103023156
TU137208 other upstream 350397 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 499291 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 1210003 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 2404989 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 2851381 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 1216342 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 1335343 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 3027180 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 3789372 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 6430568 13929065 ~ 13935667 (+) True G103376

Expression Profile