RNA id: TU137422


Basic Information

Item Value
RNA id TU137422
length 1028
lncRNA type read_through
GC content 0.28
exon number 2
gene id G101778
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7503391 ~ 7628715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactgcttttggataactttatgctactcactcctggtgcaaagattcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaggaaactaaactttttaaatggtctcttatttgtttccagatAAATTACCTACATAAACACTTTAACCCTTAAATCTCTACAGTAGTTATTAAACAATCTTCTGGCAGGCTTTATAAGGTGTTAAACTATGTTTGCCATGTAATGCCTGATTATAAATGCCTACATTATGTATTATATGAATACAAGATTAATAGAAAGTTAATAGTTTACTCTGAAGCAgcagattctgattggttgcctattactgtaattttaccaaTCACATCCTTTAAAATCGAGTTAAAAATGATGGTTCTTTCTGTACACTTATTAAAAActtatttattgcaaaaaaaagcttcatgaAGTAAAGTTTGACAAATGGGACTTTTACTGTGTAACTGAACTGCCTTAatgtaaatactgtttattgtaaatagtatttgatttatttttgttgctttttttaaacaaatgaaatgGAGGGGCACCAACACATTACTCTGCGTCTTTTGCAGTGTGtctatatttttgttgtttcgaatatttttattttgtacttattttgTAGATTTCCAAATGATATTTCtaaatctgttgttttttttttcgtgacaAAAGTTGTTTTTTGCCAACTGAATGAAAAACCTAATAAAATCAACTTTTTGaatattcaacttttttttcctaagtgtttttatttctgtggTGAATTTTGTCTCTTCACTTCTCATTAGCTTATCCacataataatagaaaatacaaATAGTTGTAGTCTGTTTCCAGATTCATATtacgtaaaaaaaattaaacgttaaacgttaaaaataaaaaaagatttaaatttaaaatatgtttatgaaTTTTTACTTGTTTGATGTACTGTGAATCCCaaaattgttatttatattgtgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137410 lncRNA upstream 3554 7497431 ~ 7499837 (+) False G101777
TU137411 lncRNA upstream 3554 7498593 ~ 7499837 (+) True G101777
TU137412 lncRNA upstream 3554 7498859 ~ 7499837 (+) False G101777
TU137406 lncRNA upstream 4894 7496470 ~ 7498497 (+) False G101776
TU137408 lncRNA upstream 4894 7496737 ~ 7498497 (+) True G101776
TU137497 lncRNA downstream 163009 7727157 ~ 7727563 (+) True G101832
TU137506 lncRNA downstream 222605 7786753 ~ 7798517 (+) True G101836
TU137507 lncRNA downstream 222605 7786753 ~ 7798517 (+) False G101836
TU137503 lncRNA downstream 224005 7788153 ~ 7798517 (+) False G101836
TU137552 lncRNA downstream 257290 7821438 ~ 7821748 (+) True G101862
XM_007246674.3 mRNA upstream 59896 7435630 ~ 7443495 (+) True tpt1
XM_007246670.3 mRNA upstream 110166 7384757 ~ 7393225 (+) False LOC103042156
XM_007246669.3 mRNA upstream 110166 7384758 ~ 7393225 (+) True LOC103042156
XM_022674644.1 mRNA upstream 158327 7338167 ~ 7345064 (+) True LOC103041253
XM_007246665.3 mRNA upstream 184472 7294285 ~ 7318919 (+) True LOC103040938
XM_022674651.1 mRNA downstream 145151 7709299 ~ 7770528 (+) True LOC103034778
XM_022674652.1 mRNA downstream 145151 7709299 ~ 7770528 (+) False LOC103034778
XM_015605166.2 mRNA downstream 145151 7709299 ~ 7770528 (+) False LOC103034778
XM_007246696.3 mRNA downstream 976846 8540994 ~ 8543564 (+) False LOC103023156
XM_007246697.3 mRNA downstream 976849 8540997 ~ 8543564 (+) True LOC103023156
TU137208 other upstream 357051 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 505945 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 1216657 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 2411643 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 2858035 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 1150691 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 1269692 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 2961529 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 3723721 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 6364917 13929065 ~ 13935667 (+) True G103376

Expression Profile