RNA id: XR_002650574.1


Basic Information

Item Value
RNA id XR_002650574.1
length 2500
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC111193521
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 8328448 ~ 8339269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTCTTGTCGACAGAAGATGTAACTCCCAAAATCAAGGTAACAAAACCTAGGACAAGAGCAGCATCACATATAAATGACCCTGAAGAATCTGAAGTCGATTCAGATTTTGATGAAAGCCCCATTCACTACTACACATACCCACTCAGATTCAATCCAATAGAAGCAACATGCTCTATTGAGAACCCACCAAAAACAACCTCTGAAAACATACCTGAAGTAATCTCTGAGAATTTACCTGAAAACCTACCTGAAATGATTCCTGAAAACTTACCTGAAATGATTCCTGAAAACCCACCTGAGGATAGGGATGTCTTTCCCGAGTTACCAGGAGAAACATCACATATCACACTTGTAGCTACTGATCCTACTGTACACCAAACTGACTCCAAGGACACACCCGAACAAGTGGAACCTGAAAGCAAGATGGAAGAAGAGACAGAAATTCATCAACAGTCTTGTATAGCTGAAGAGGATGAAATGGAAAACCCAGTGAGACACTCTACTAGGTCTAGAACAAGAGCCAAAAGATTAACCTACCCTGAGTTAGGGAATCCCCTCATCTCCGTAGTACAGTCACTATTTCAAGGCCTAAGTACTGCCTTTACCCAGTCCCTCCTAGAAACCCCTTATGGGAACCCAGATTCACCTGATTACCATGCCCTTCGCATGCACAGGGACGTGCATACCGTTTAAGGCGGGAGGATGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGCGGGGAGCGAGTCTGTACAGCGGATCGCTTCGTCATCGCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGAGTCTTCACCGCGATCGCTTTGTCATCACCGCAAGGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCACTAGAGACTTTTATCTTGTTGAAATCCACAcctttactatattttttttattgaatttaattgaatgatTGGGTTGAATTCTTTTGAACTTAATTTACTgttgaatcatttatttttgttattttgttattttggttaattgtttggttatattattactgtgaaaCATTGGGAATCATTTATTCTGTTGGAAAAAGAAATCTGAGACTGAAAACtgtgtaaattatattatagaatAATATAAATACCATACTTACCTCTTAACCTGCAAAATAGACAATACCTACCTTAAATACTTACCATAATTCCctaattatacttaccttagATATTGATCCAAAACCCCTAACTTAAAACCtaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaatactAACACTGAGGACTgagtaataaaatagtaaatactttctaaatatatatctataatattaTAAACGTCTAACACTGGgtattatgtaaaatatttatagaaagAGGGAAACAAAATTGATACATACCTCTTGGTGAATaccattgtttattatttgttttattgtgatactgtgttttctttgatcttttttttttttattttatttccttacCCCCTACCCTGTTTACCTATTGAGACCcctatttttaaagttttaatacaatttctgtaattttaccCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650575.1 lncRNA upstream 6560 8329004 ~ 8329897 (+) True LOC111193522
TU137605 lncRNA upstream 144715 8190545 ~ 8191742 (+) True G101895
TU137602 lncRNA upstream 192470 8143677 ~ 8143987 (+) True G101892
TU137597 lncRNA upstream 208519 8105725 ~ 8127938 (+) True G101889
TU137593 lncRNA upstream 227092 8105725 ~ 8109365 (+) False G101889
TU137692 lncRNA downstream 11160 8350429 ~ 8350698 (+) True G101949
TU137698 lncRNA downstream 77928 8417197 ~ 8417621 (+) True G101954
TU137725 lncRNA downstream 200213 8539482 ~ 8539717 (+) True G101974
TU137764 lncRNA downstream 278902 8618171 ~ 8618392 (+) True G102004
TU137785 lncRNA downstream 367149 8706418 ~ 8706877 (+) True G102014
XM_022674651.1 mRNA upstream 565929 7709299 ~ 7770528 (+) True LOC103034778
XM_022674652.1 mRNA upstream 565929 7709299 ~ 7770528 (+) False LOC103034778
XM_015605166.2 mRNA upstream 565929 7709299 ~ 7770528 (+) False LOC103034778
XM_007246677.3 mRNA upstream 775530 7542340 ~ 7560927 (+) True LOC103044305
XM_022674649.1 mRNA upstream 797823 7469345 ~ 7538634 (+) False pibf1
XM_007246696.3 mRNA downstream 201725 8540994 ~ 8543564 (+) False LOC103023156
XM_007246697.3 mRNA downstream 201728 8540997 ~ 8543564 (+) True LOC103023156
XM_022674661.1 mRNA downstream 310851 8650120 ~ 8664508 (+) True LOC103024012
XM_022674662.1 mRNA downstream 345635 8684904 ~ 8686520 (+) True LOC111193523
XM_022674665.1 mRNA downstream 458513 8797782 ~ 8826133 (+) False LOC103025691
TU137208 other upstream 1190117 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 1339011 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 2049723 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 3244709 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 3691101 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 375570 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 494571 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 2186408 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 2948600 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 5589796 13929065 ~ 13935667 (+) True G103376

Expression Profile