RNA id: TU137786


Basic Information

Item Value
RNA id TU137786
length 3526
RNA type TUCP
GC content 0.42
exon number 3
gene id G102015
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 8714839 ~ 8719235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCAGGCAGCAGATCACGTTATTAAGAGcaataaaaaattaatctgATGTTCATGTTTTTCTGTCCCCAGCCCACCCTCTGTAACCcccactccaacacacacacacattaaaaaaggaCACAACAGCCGAATTAACACAAGTTTCACTggcttccttttttttcttgtttttaatcatttcaaTCAGAGCATCCAACCAGCAGCgatttcattttctatttaaGAGCTGAAGATGATTTACACACACTTCACCAACACTCCActcagatacagagagagagagagagagagagagagagagagatgaggggCAAAGGAAGAACAGTATGACAAAGAGAGAtatacaaaaagataaaataggaagatggaaaaagagaaagaggagagagagtgattcacacaaaattaaatgggaagagaaagaaaagaaaaaagagagatacatGCAAAGAATAGAGAGACATAGCCATTCACATAGCcataaaaaatcagatctgagccacattgagcaaaaatcCGATTTGaatcactttagcctggtaatgtaaacaTAGCCTTAGAGTATGGGTGGCCAAACTTTTGAACACGAAGAGTATTATTACTACCTGGAGCAACAGGTTATGAACAACTTTTCAAAAATTCCCCTTCACTGTATGGCTTTTTAGCATGAGCAATATTCCAAGCCATCTGACAGGAGGCAAGCGTGACCATTTATGACCTGTTTTGTTAGCTTCTGAAACTGTCAGGTTccaacccccgctcatgcagctttgccatcaagatgccggcgctcagagggatcAAAATtgggccctgctccctccgggtgggtagatggcgctctctccccacatcactcctagggtgatgtcgaacagcacagggcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccaaatgcgctgtgatgctactcagtaatgctgcatcagcagcagctcgaaaagaagcggaggctgacttcacatgtatcggaggaagcatgtgctagtcttcacactcctggtgtgttggggcatctctagtgatagggggagtcttagtgagtgggttgggaaattggctgtgtaaattagggagaaaatgggcaaaattagaaatatatatatatatatatatatatatatatatatatatatatatatatataaaaaggaaCAGGCAAGAGCCGCATGTGGCCACCCCTGCCTTAGAGTACACCAGTTTACTTTCTTTTTACACAGCATTGGAATCCAAATCTTCCCTCTGAGTGCAACTATTTACTTGATGATGagttttgttcttgtttttggtCAAATCTGTCACAtggtcactttttttttgttttaaacacaataaacacacacatacacacatacagaacaCAGTAATATAATATCTGACACAAACACAGGAGAATTTGTTCTCTGCAGATCAAAGGAGCACTTTGAGGAAGGAGGTCTGATGCTGCATTCCAGGAATTCGACAGAAGACACTTTGAAGAGAGCGTTAGTGGATCatcagtagtagcagcagcagcttcttcTTCTACAAAACTACAACAGTCCTTTAATCACTCGAGTCTATTCGCTTCTCATTGGTCTCTTCTTTAAGCAGCACTCGTCATTCATTCGTCCAACAGAATCAGTCAGGTTTGGGCAATCGGAGCAGACGCTGGGTGTGGGTGGATGAAGGCGTTTGAAGTATTAGACTACAGGTATACTTGCTGTAGTATTTGTTCGGCTATACATTTATGTATATGATCCATAATCCATAATccataatttctggtatttgcttatttttgctcgtattttatcctcttcagtcaCAAAGATGCCATAAAGTATTGTTGAGAACTGTTGTgcgatatacaggggttggacaatgaaactgaaacacctggttttagaccacaataaattattgtcctGATGGACAGCTCTGGGGGACACAGGAGAgttgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttgcatgtggttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttactGTCTTGGTCGcagatgcggcagcaagacgtgcaccaataatttgtgtgcattgcaatattttgagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggcgcaataatgtgcaattaatgaagactgaccaccaggctgctccaatttagccatgaaacctctcgCACTataatgacaggtgtttcagtttcattgtccaacccctgtatatcgaGCATCACAGAATTACAGACTGGCGTCTGGCTAAAACTGTCCATGCGAACAGGCGACACTTAAAAATTGAAACTCAAGGCATTCTGTTTCTTTAGTTTATCACATACTTAATGATCGAACAGTTTATCAGTTATACGTCCAATTGCTTTTAAGCCTTTAAAAATGGAGGGAAATGTGCAAATGTTTAAATGGCTAAGATTCCTAAAAGGTAAATTCAATGTTTGCTGGTGTAAAGAggcacaaattacacacacacaaagaaaactgtcACTGTATGAACACTTATGGACCTTAATGTATCAGTCGTAAATAATCTAAGAACCTGATTTTCTCGCTAAACCTCTTAGGAATCAAAAATCCCATGTCTCAGCTTTTAAAAACCATTTTTCAAGAGAGAACCAAAGCCCTCAAACCCTCAAACACTCTGAAAATTCTTTGCACAGAGCACATACTTCAGACGCTCCATCACACCCAGACCTGTGGTTAAGAGCAAGATTGAAACGACAACatagaagtagaagaagaagaagaagaagaagaagaagaagaataatcaCGAAGAATCGTGGTTAAAAAGTTGGCTTAGTGCAGATCATCAGTCTGAATCACAGTCAAATTCGATTTGATTCGTTTGATTCGCCTAGCTTAACACAGTTCTCATTCGTCACTTGttacaattaatatatattaaattttacCATTCTTAGTCTTAAAATACCTTTTTTGTTCTGCTAAAATCTCGCTACTATACTTATAGGCATCATTCATCATTCACTTGTAGGTAGGCAATCAATCAAGACACCCCATGACGTGGTCACCCCACGTCGTTGTGCGTACGTCTACGATTAAAGAAGGAGCAACGGCTGCTTCTTTTctcccgcaaaaaaaaaaacctcccaCGAAAATTAGCACTGAATCAGGCATGAAAGATGAAAATGTGGGCGTCATGAGATCAGGCTTTCCGCCGGCCCGAATGCGAAGCTCCAGCTGCCGTTCTCCGGGTTCCTCAGGCCTTTTGAAGCCCCACCAGAGCGCAGCTCTGCTTCCACAGCCGGCCCTGCAGCTGCTCGTCGTAGGAGGTCACCGAGGACTCGGTCTTGCGGCCGTTGTACAGATACAGCCCCCCGACCCCCTCCAGCTCGGAGGCAGCTGCGGCGTAGATGGCCGTGGAGGCTCCTTCAGCCGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137785 lncRNA upstream 7962 8706418 ~ 8706877 (+) True G102014
TU137764 lncRNA upstream 96447 8618171 ~ 8618392 (+) True G102004
TU137725 lncRNA upstream 175122 8539482 ~ 8539717 (+) True G101974
TU137698 lncRNA upstream 297218 8417197 ~ 8417621 (+) True G101954
TU137692 lncRNA upstream 364141 8350429 ~ 8350698 (+) True G101949
TU137798 lncRNA downstream 78510 8797745 ~ 8816082 (+) False LOC103025691
TU137870 lncRNA downstream 139363 8858598 ~ 8863829 (+) True G102081
TU137882 lncRNA downstream 195159 8914394 ~ 8914600 (+) True G102088
TU137900 lncRNA downstream 379517 9098752 ~ 9101093 (+) True G102098
XR_002650576.1 lncRNA downstream 391655 9110890 ~ 9115477 (+) True LOC111193524
XM_022674662.1 mRNA upstream 28319 8684904 ~ 8686520 (+) True LOC111193523
XM_022674661.1 mRNA upstream 50331 8650120 ~ 8664508 (+) True LOC103024012
XM_007246696.3 mRNA upstream 171275 8540994 ~ 8543564 (+) False LOC103023156
XM_007246697.3 mRNA upstream 171275 8540997 ~ 8543564 (+) True LOC103023156
XM_022674651.1 mRNA upstream 944311 7709299 ~ 7770528 (+) True LOC103034778
XM_022674665.1 mRNA downstream 78547 8797782 ~ 8826133 (+) False LOC103025691
XM_022674667.1 mRNA downstream 78549 8797784 ~ 8826133 (+) False LOC103025691
XM_022674663.1 mRNA downstream 78557 8797792 ~ 8836081 (+) True LOC103025691
XM_022674664.1 mRNA downstream 78558 8797793 ~ 8836081 (+) False LOC103025691
XM_022674668.1 mRNA downstream 120839 8840074 ~ 8851853 (+) True LOC103036357
TU137208 other upstream 1568499 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 1717393 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 2428105 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 3623091 5086760 ~ 5091748 (+) True G100975
XR_002650570.1 other upstream 4069483 4629123 ~ 4645356 (+) False atg4d
trnar-ucu_1 other downstream 114605 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 1806442 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 2568634 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 5209830 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 5541390 14260625 ~ 14261539 (+) True G103490

Expression Profile