RNA id: TU138943


Basic Information

Item Value
RNA id TU138943
length 1964
lncRNA type sense_over
GC content 0.34
exon number 2
gene id cab39l
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12000639 ~ 12024764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctggagcacttagccgctaatgctaatgctaaattcTGTACTTCTGTACCTAAGCTTACTATACATaaacaaaagcgctttactcacccaaataaacagttttcaggagagaaatctgtgtagattaacatccagtgctcgttttactttaaaagaaagtcattttttattattatagttttgtttacttaacttagctttacttagttAGCTAAGTTTTCATTGCTAGGAACAGGAGCCCTACCCAAAGGAAGCAGAAATGGAGGGCATGGCAGATAAAATAATCCTTGACCAGTCGACTGAATATGAAAAATACATAACAGATTTGTCTGTATCTTCATGTTCTAGCCATGTGTAGCTCTTCTATCAGCACCATTAGGAGCGCTGCATTTGCTCAGATAACCAACCTATTAAGTAAGTAGTaaaaaaaaatacttgggCACTTTCtctagtattttatttaattttattatatattttttcgttTCTTCCCCTTCTCTCAGTACTATAGTACACTATATAGATGCAGCTATAGTATTTTGGTAGTACTGTAGTGCATTCAGTAAGTGCTATAGTACTCTATAATCCTCCTATAGCAGGTTTAATAGCCTCCTATAGAAAGGATCCATGTCGTAGCCCACCTGCTATATAGTACGTTCTATTCTATCTTAATAATACTATTGTACAAACCTTTTACGTTCATTGACGAGTGATTTCTGTACTGTAGCGCGGTACTGTACTATAGTACTACTACAGTATTCCTCTGTTATCTGTTATTCTTCTTCAGTAGCCATTATTCTTTAGCTAGTTCTACATTGTGATTATGATTCATGATTAATGATTCTGGCAGACGAGACAGCATCGATTAGGATCTAAGCTGATACGATACACAGTCGAGTCGAGGACACGGacgtataaatatatatatatataaaacaaaaaaaaacaggtgccttttgttgtgttttaattgtatttctttttttcttttcccttgttcttttgtattttataaaaaacaagatCTTTCTTAGGGGGAGCttaatttcattgtttttttttttgttattaatttttaagAGATATGTTCTAGTGGAGCATATTTGAATCGATTAAGCAGTGAACCTCTTTAATAACTCACTATATTTGAGTTACGCTGATGAAGAcagtcaaactttttttttttctctttttactctttttttttttactttcattctTTGCAGCTGCAGTTGATTTATTGATTCAGTTGTATGATGATTTGTCTGTGACCTAACCATTAGAGTAGGCCGATCAAGTGATCAAGTGCGAGGGGAAATGTATGCTGAGGTGGTCTTTGACCCGTGTTATCACACATAACCTGCCAATTATGTGAAAAATTAatgttatgtttatatataatatatatatatatatgctgatcTTTCCATTTTTATGGTTTTCTCTGaattttgaagagtttgatCACGACAGATTTGTCCgagcaaacagacaaacaaacgaaatgaaagtaaagtaaaatgaacttcaCGAAATTCATCGGGAAGCACTTCCCCAGTTCATTCATTGCCAAATCTTTATTGAGGATGAAGAAATCCAAACCGTCGCACAGTCTGTTTGCTTCCCTTCCTCGCGGTTTCAATCTGCATTAATAGCTCAGATCGGGTGCAGGCTTTTTCAGTATTgcgcaaaaaataaaaataagaagtcAGCCATGGAAAACATGTCAGCCCTTCAGCAGGGGAACCATTTAAATATAGtagtaatatataaaacagcatCTGAGCCAAATTTATCCAGTATCTTCACACCCTCATATGTAACAAAGAAATTACAGTCAAAAAACGAAATCAAGATGAGCTACCATATCGAAACTGATATCGTTTCCCATGCCACACATGGTTGCATCCTTCCTTCTTAAATGCTAATTGTACCATATCACCAATAAAGGAAAATTCAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138930 lncRNA upstream 22078 11986963 ~ 11987199 (+) True G102810
TU138929 lncRNA upstream 22388 11986586 ~ 11986889 (+) True G102809
TU138919 lncRNA upstream 230519 11771576 ~ 11778758 (+) True G102804
TU138920 lncRNA upstream 232291 11770771 ~ 11776986 (+) True G102805
TU138725 lncRNA upstream 294224 11714694 ~ 11715053 (+) True G102671
TU138954 lncRNA downstream 21468 12046226 ~ 12050713 (+) True G102822
TU138946 lncRNA downstream 38778 12063536 ~ 12067895 (+) True G102816
XR_454929.2 lncRNA downstream 101163 12125921 ~ 12127541 (+) True LOC103046989
TU138993 lncRNA downstream 113736 12138494 ~ 12138702 (+) True G102850
TU138998 lncRNA downstream 120131 12144889 ~ 12194777 (+) False LOC111193532
XM_022675032.1 mRNA upstream 12550 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 375502 11631733 ~ 11633775 (+) True LOC103035965
XM_022674701.1 mRNA upstream 558893 11404244 ~ 11450384 (+) False LOC103036596
XM_007251327.3 mRNA downstream 31352 12056110 ~ 12058454 (+) True arl11
XM_007251371.3 mRNA downstream 332272 12357030 ~ 12378962 (+) True LOC103032463
XM_007251339.2 mRNA downstream 486959 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 486959 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 488433 12513191 ~ 12522303 (+) False cryzl1
TU138581 other upstream 714462 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1483117 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3175346 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3290042 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 4862937 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1904307 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 2235867 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2593877 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2666285 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4426417 16451175 ~ 16458209 (+) True G104000

Expression Profile