RNA id: XM_022674708.1


Basic Information

Item Value
RNA id XM_022674708.1
length 3720
RNA type mRNA
GC content 0.37
exon number 8
gene id cab39l
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12000639 ~ 12024764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCACTGTTTGGTAAATCCCACAAGAGTCCTACGGACATTGTGAAGGCCCTCAAGGATAACCTGTCCATTCTGGTCAAGCAGGACAAGAAGACCGAGAAGGCATCAGAGGAGGTGTCTAAATGTCTGGTTGCGATGAAAGAGATCCTGTACGGCACCAATGACAAAGAGCCACATACGGAGACGGTGGCCCAGCTGGCCCAAGAGCTGTACAACAGCGGCCTGCTCATTTCACTGGTGGAGAACCTGCAGGTCATCGACTTCGAGGGTAAGAAGGACGTGTGCCAGATCTTTAACAACATCCTGCGCAGGCAGATCGGCACCCGCAGCCCCACAGTGGAATACTTCTGCTCCCATCAGGAAGTGCTCTTCATCCTGCTCAAAGGGTATGAGACTGCTCAGGTGGCTCTGAACTGTGGCATCATGCTGCGCGAGTGCATCCGGCACGAACCGCTCGCCAAAATCATCCTGCACTCTGAGCACTTCAATGACTTCTTCAGCTACGTAGAGATGTCCACATTCGACATAGCCTCAGACGCTTTCGCTACCTTcaagGATCTTCTCACAAGACACAAGGTTCTAGTGGCAGAATATTTAGAACAGAACTACGATGCAgTCTTTGAGAACTACGAGAAGCTGCTGCACTCTGAAAACTATGTGACGAAGAGGCAGTCATTGAAGCTATTGGGAGAGCTCCTCTTGGACAGACACAATTTCACTGTGATGACACGGTACATCAGCAAGCCGGAGAATCTCAAGCTCATGATGAATCTACTGAGAGACAAAAGCCCCAACATCCAGTTCGAGGCGTTCCACGTCTTCAAGGTGTTTGTGGCCAACCCGAACAAGACGCAGCCGATCGTAGACATCCTTCTGAAGAACCAGACGAAACTCATCGACTTCCTTAGCAACTTCCAGAAGGACCGCACGGACGACGAACAGTTTAACGATGAAAAGACGTACCTCATCAAACAGATACGAGACTTAAAGAAGCCCGCCTCCTAAACCTTAGCTAGCACTCGCGTTATTAAGCACCTCATCTTTTTACTgaggaaaaacaaatgaaaaaaaatcacaaaaatctATTAACAGTAATAATTCTATTTAAAATCTTCAAACATTTGTCTTTTCTTAGTCACGAAGCTCGCGAATGATAGTTTTCCATCACTGACAGTTCaattacttttcttttcttttttctttccacttTCTTTCATAAACATTTTTCGTTTGTGTGCCACAATagggtgtttaaaaaaaatcataaaacaacGTAAAACGTAAAAGCAACCAATTTTGTTTCAGGAAGAACCAAAGGTTGTAGTAACCTCAATATAGAAGAAGTGCGTGAGTCAGGACCTAAGAGAACGCTTCACacttattatttctttttctttttttaataatacattcagcttaatgttttgtataatcttattttttccacctTTACCACTCCAAATACTGTTATACACCCACAGGTCTGgcatgctaaagctaaagctgaagagaagagaggagagagctcTTGTACATTATGTAGATGATACCGGTAGTAGTGGACTTGTAGGAAGGGAGGTTGCATTCCCCAGTTATTTATAATGctctgatttttcttttttcttttctgagtTTAGAACTCGTTCTGTATTTAGAGACTTCGTTTCTgcattcctttttttcttctttttttttttatttgattttttcttCCTATACACTGATGCTGTTTAGCTTTTTCCCTTTTCTCCTGCACCTGTATGGCTTACTGCTGACTCGGAATTTTTGTTTTGACttcaaaagaaatatatatactgaTCATGTAATCcctttttagtgttttaaaaaatatatgtttaaggAATGAAGATTTGATTTGACCagtattctttttattattattataattattattattgttattaggtTTCTGCCATAAAATTGAAGCGCAGTTAATCTTAATGTGTGCTTAAGTAATATATAGACCTAACTACTACTAAATTAATAAGAAAaagtcttttttctttctttaagttATCGATTATGTTTGCGAAACAAAAACAGGGCGTgtaatcttcttcttcttattgctattttcttttttttcattttctacttGACATGTTTACCCATCATGTGTTTAAAGGCTGAAAGTGGGTGCCATGTTagtaagtagaaaaaaaaatacttgggCACTTTCtctagtattttatttaattttattatatattttttcgttTCTTCCCCTTCTCTCAGTACTATAGTACACTATATAGATGCAGCTATAGTATTTTGGTAGTACTGTAGTGCATTCAGTAAGTGCTATAGTACTCTATAATCCTCCTATAGCAGGTTTAATAGCCTCCTATAGAAAGGATCCATGTCGTAGCCCACCTGCTATATAGTACGTTCTATTCTATCTTAATAATACTATTGTACAAACCTTTTACGTTCATTGACGAGTGATTTCTGTACTGTAGCGCGGTACTGTACTATAGTACTACTACAGTATTCCTCTGTTATCTGTTATTCTTCTTCAGTAGCCATTATTCTTTAGCTAGTTCTACATTGTGATTATGATTCATGATTAATGATTCTGGCAGACGAGACAGCATCGATTAGGATCTAAGCTGATACGATACACAGTCGAGTCGAGGACACGGacgtataaatatatatatatataaaacaaaaaaaaacaggtgccttttgttgtgttttaattgtatttctttttttcttttcccttgttcttttgtattttataaaaaacaagatCTTTCTTAGGGGGAGCttaatttcattgtttttttttttgttattaatttttaagAGATATGTTCTAGTGGAGCATATTTGAATCGATTAAGCAGTGAACCTCTTTAATAACTCACTATATTTGAGTTACGCTGATGAAGAcagtcaaactttttttttttctctttttactctttttttttttactttcattctTTGCAGCTGCAGTTGATTTATTGATTCAGTTGTATGATGATTTGTCTGTGACCTAACCATTAGAGTAGGCCGATCAAGTGATCAAGTGCGAGGGGAAATGTATGCTGAGGTGGTCTTTGACCCGTGTTATCACACATAACCTGCCAATTATGTGAAAAATTAatgttatgtttatatataatatatatatatatatgctgatcTTTCCATTTTTATGGTTTTCTCTGaattttgaagagtttgatCACGACAGATTTGTCCgagcaaacagacaaacaaacgaaatgaaagtaaagtaaaatgaacttcaCGAAATTCATCGGGAAGCACTTCCCCAGTTCATTCATTGCCAAATCTTTATTGAGGATGAAGAAATCCAAACCGTCGCACAGTCTGTTTGCTTCCCTTCCTCGCGGTTTCAATCTGCATTAATAGCTCAGATCGGGTGCAGGCTTTTTCAGTATTgcgcaaaaaataaaaataagaagtcAGCCATGGAAAACATGTCAGCCCTTCAGCAGGGGAACCATTTAAATATAGtagtaatatataaaacagcatCTGAGCCAAATTTATCCAGTATCTTCACACCCTCATATGTAACAAAGAAATTACAGTCAAAAAACGAAATCAAGATGAGCTACCATATCGAAACTGATATCGTTTCCCATGCCACACATGGTTGCATCCTTCCTTCTTAAATGCTAATTGTACCATATCACCAATAAAGGAAAATTCAAgcattaa

Function

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138930 lncRNA upstream 24035 11986963 ~ 11987199 (+) True G102810
TU138929 lncRNA upstream 24345 11986586 ~ 11986889 (+) True G102809
TU138919 lncRNA upstream 232476 11771576 ~ 11778758 (+) True G102804
TU138920 lncRNA upstream 234248 11770771 ~ 11776986 (+) True G102805
TU138725 lncRNA upstream 296181 11714694 ~ 11715053 (+) True G102671
TU138954 lncRNA downstream 21462 12046226 ~ 12050713 (+) True G102822
TU138946 lncRNA downstream 38772 12063536 ~ 12067895 (+) True G102816
XR_454929.2 lncRNA downstream 101157 12125921 ~ 12127541 (+) True LOC103046989
TU138993 lncRNA downstream 113730 12138494 ~ 12138702 (+) True G102850
TU138998 lncRNA downstream 120125 12144889 ~ 12194777 (+) False LOC111193532
XM_022675032.1 mRNA upstream 14507 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 377459 11631733 ~ 11633775 (+) True LOC103035965
XM_022674700.1 mRNA upstream 560851 11404244 ~ 11450383 (+) True LOC103036596
XM_007251327.3 mRNA downstream 31346 12056110 ~ 12058454 (+) True arl11
XM_007251371.3 mRNA downstream 332266 12357030 ~ 12378962 (+) True LOC103032463
XM_007251339.2 mRNA downstream 486953 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 486953 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 488427 12513191 ~ 12522303 (+) False cryzl1
TU138581 other upstream 716419 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1485074 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3177303 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3291999 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 4864894 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1904301 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 2235861 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2593871 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2666279 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4426411 16451175 ~ 16458209 (+) True G104000

Expression Profile