RNA id: XR_002650582.1


Basic Information

Item Value
RNA id XR_002650582.1
length 3478
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC111193532
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12144889 ~ 12194777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGCATGCCGGGAACATGGACTTGCTGAGTGGTTTGAAGGTGGAAAgacactttttcacacttttttcgAAGCGCTTGTGCACCGTTAAGCAATCATGAGAGTCACAGCACTGTTGGCATCACTGAGGGGAGCACCAACAACACTGAGGTGgctGTTTACCCACCCTTGCATCCCTCATCCAGCCCCTGGCCTACCACAGGCAGTGAGTGCAGCAAATCGCACAAAAACAGAAGCTATCGCAGAACAGAATCAACAATTATGGGCCAATCAAATCTCTGGGGTAAGCAATCACTCATATACACATACGTTAATGATAAAACCCTCTCGGACTGTGATCCGATGGAAGACAAGTTTCTATTGGGTTAAACGAGTCATAATGACTCTAAGGTAGCCTAAAGACCAGTCCTCTTTCCATGGAGTCAGTTTGTCTTGGATGTAGCTCTGTGCATGTGATGAGccactattttaaatgttaacatgtgtttttcataataatttCGTAGTAACTCAGGTTACTCAGGTGCATGATAGTTATATTTTGAGCTCACTGTTATTGTTTGCTAAGAGTCCTTATGACCTCtttacttactttttatttaccCTGATACAGTGATGATACAGTGTTAGTGGCCATTCAAATATTCTATCTATGCTTCTGCTGGGAGCATTCTCTGATATGATGCTTCTAACCTTCAGAAATATCGTACCTGCTGTTTAATTTTGGCTTTACCACCAAAAAATATACACTGTGGTAGCACATTTTGACATAGTTGTATAATTTTGACAAAACACTGGTTCGGTTCATGGACCGACAACGCTTCAGTTGTATGATTTGAGCATACTGTTATTATTTGCTTGAGagctaataaaaatgtattgacgatttttaaaaaaatcttcactGTTATTTACATATGAATTTACCTTATATTTACCCTGACAGTATAATGACaattaatgcaattaaataaaatatatttttatgtctgTTATCATTTATATTTACCCTGTTATAGTCATTTAGGCCATCCAAATATTCTATCTATATTTCTGTAAGGAGCATTTTCTGATCTAATGCTTTCAACCTGTAGAAATATCTTACCTTCTGTGTAATTTAAGCAGCCTtaccaataaatatatattgtgatagtaCAGTTTAATAAGGTAGCTCAAATAGGTTGTTCGTGGGCAGTGTACAGAGTGGGGAATCATACAGCTTACTGTAATTATTTGTGAGAGttcaaatgtaataaaatcCTATTACACTCAGTCACCTTATATTTACCCTGATATAGTGATTTAGGACTTCTGCTGGGTGCATTGTATGCTTCACTCTATGAGCATATCCTAtctaatggtttataaaggcaACTTTACAAGCAATAACCATAAATTGTGGTAACACGTTTTGACAAGGTTTGTGGGCTGTCTACAGATTGGAGAACAACGTCACAAGCAAATAATGACTGTAAGCTCTAATTAAGAGTCACAAAAATGTAGTGACtataagaattaaaaaatatattttacttatgACCTCAGTTACCTTCTCTTTAGCCTGATATAGTGATTTAGGATACACAAATGATCTACCTATACCTAACCCATACATATATTCAATCTTTAGAAAGATTCCTGCTGTTTATTTTAGACAGCTTCACAAATAAGTATACACTGTGGTCATACGGTTTGACAATGTATCACAATTCTGACAAAACACCAGTTTGTGGGCTGTCTACAGAGTGCAGAACAACAGGgcagcttattattattttttttacatcagttaccttatttttacatatatatatagtgattatataatattctgacaTACAAATATCATACTTATACTTTTGCTGGGAGCATACTATGCGTTTAGAATATCTAACACAATATCCTACctgctgtttaatttatttatcttcaCCAATAAATATACACTGTTGGTAGTAAGTTTTGACAAGACAGCACAAATTGACAAAACACTGGTTTGGTTCTTGGGCTGTCTACAGAGTGTAAAACAACGAGGTCACTAAAAAGTTTTAGTGTTACAATCTGAGCTTACTGTTATTATTTCCTTGAGTTACAAAAATGCAGTGatgattaaaatttttaaaataattttcttaagACCTAACTTAAATATCCTTTCTGCTGTTTAATTAAGACaactttacaaataaatacacactgcAGTCGTATGATTTGACAATGTAGCACAGTTTTGACAGAACACCAGTTTGTGGGCTGTCTACAGAGTGGACAACAACAGGGCCAATCTAAAAAGTGTCACTGATCTGTgcttactgttattatttttttcacattagttaccttatttttacatatatatactgATTTCTGACATACAAATATTCTATTAATACTTCTGCTGGGAGGTTTCTTTGCTTTCAGAATATCTAACAGAATATCCTACCTGCTGTTTACTTTATTTAGCTTCaccaatattaaatatacattgtGGTAGCAcgatttgacaaggtagcacaaatAGCACAAATCGATAGAAAACCGGTTCAGTTCATGGTCTGTCTAAAGTGGAGAACAACGAGGCCACTCTAAAAAAGTTTCAGCGTTACAATCTGAGCTTAATGTTACAAAAATGTAGTGACGATtagaatttaacatttttttttcttattaccTCAGTTACATTATCTTGACCCTGATATAGTAATTTAGGCTACACAAATTAACTGCATATATTTTACCTAAGTTAAATATCCTTCCTGCTGTTTAATTTAGACagctttacaaataaatacacattgcGGTTGTACAGTTTGACAatgtattacagtttttacagatCACCAGTTTGTGGGCTTTCTGCAGAGTGGAGAACAACAGGGACAATCTGAAAAGAGTCAGCGATACAATCTGAGCTTACTGTTATGATTTTTCATATCAGTTACCTTATTTTAACCCTTATATAGTGATTTCTGCTACCtgctgtttcatttatttatcttcaACAATAAATGTATACTGTGGTAGTACGTTTTGAAAAGGTAGCACAAATTGACAAATCACCAGTTCAGTTCGTGGGCTGTCTACGGAGTGTAGAACAACAAGGCCACTGTAAAAAATTTCAGTGTTACAAACCAAGTTATAATTTTCTTATAACCTCAGTTATCTTCTCCTTTCCCTGATATAGTAGTTTAGGCCACAAAAATGATCTTCTTCtgttaaaaataacttaaatatcCTTCCTGCTACTGAATTTAGACagctttacaaataaatatacacagtGGTAGTAAAGTCTGACCTTGTAGCACAATTGTGACAGAACACTAGTTTGTGGGCTGTCTACATTGTGGAGAACATCATCAGTTTATATCAGTTACCttaatacacagctctggaaacaattaagagaccacttcagtttctgaatcagtttctctgattgtgctatttacaggtatatgattgtgtaaaatgaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138993 lncRNA upstream 6203 12138494 ~ 12138702 (+) True G102850
XR_454929.2 lncRNA upstream 17364 12125921 ~ 12127541 (+) True LOC103046989
TU138946 lncRNA upstream 77010 12063536 ~ 12067895 (+) True G102816
TU138954 lncRNA upstream 94192 12046226 ~ 12050713 (+) True G102822
TU138943 lncRNA upstream 120147 12009277 ~ 12024758 (+) False cab39l
TU139033 lncRNA downstream 109340 12269948 ~ 12270255 (+) True G102888
TU139035 lncRNA downstream 113181 12273789 ~ 12279012 (+) True G102889
TU139041 lncRNA downstream 122896 12283504 ~ 12287736 (+) True G102891
TU139052 lncRNA downstream 150616 12311224 ~ 12314024 (+) True G102900
TU139053 lncRNA downstream 158404 12319012 ~ 12323584 (+) True G102901
XM_007251327.3 mRNA upstream 86451 12056110 ~ 12058454 (+) True arl11
XM_022674708.1 mRNA upstream 120141 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 122678 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 148178 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 511130 11631733 ~ 11633775 (+) True LOC103035965
XM_007251371.3 mRNA downstream 196422 12357030 ~ 12378962 (+) True LOC103032463
XM_007251339.2 mRNA downstream 351109 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 351109 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 352583 12513191 ~ 12522303 (+) False cryzl1
XM_007251347.3 mRNA downstream 374672 12535280 ~ 12539566 (+) True cbr1
TU138581 other upstream 850090 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1618745 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3310974 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3425670 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 4998565 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1768457 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 2100017 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2458027 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2530435 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4290567 16451175 ~ 16458209 (+) True G104000

Expression Profile