RNA id: TU139071


Basic Information

Item Value
RNA id TU139071
length 781
lncRNA type intronic
GC content 0.48
exon number 2
gene id G102907
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12366250 ~ 12368274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacattagcaactgcctagcaaccacttagcaactgctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacttggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactggcctagcaaccacttaggcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagcaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139053 lncRNA upstream 42666 12319012 ~ 12323584 (+) True G102901
TU139052 lncRNA upstream 52226 12311224 ~ 12314024 (+) True G102900
TU139041 lncRNA upstream 78514 12283504 ~ 12287736 (+) True G102891
TU139035 lncRNA upstream 87238 12273789 ~ 12279012 (+) True G102889
TU139033 lncRNA upstream 95995 12269948 ~ 12270255 (+) True G102888
TU139080 lncRNA downstream 228 12367302 ~ 12368274 (+) False G102907
TU139075 lncRNA downstream 341 12367415 ~ 12368274 (+) False G102907
TU139072 lncRNA downstream 438 12367512 ~ 12368274 (+) False G102907
TU139054 lncRNA downstream 12017 12379091 ~ 12382633 (+) False G102902
TU139055 lncRNA downstream 12017 12379091 ~ 12402254 (+) True G102902
XM_007251327.3 mRNA upstream 307796 12056110 ~ 12058454 (+) True arl11
XM_022674708.1 mRNA upstream 341486 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 344023 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 369523 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 732475 11631733 ~ 11633775 (+) True LOC103035965
XM_007251339.2 mRNA downstream 144643 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 144643 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 146117 12513191 ~ 12522303 (+) False cryzl1
XM_007251347.3 mRNA downstream 168206 12535280 ~ 12539566 (+) True cbr1
XM_022674726.1 mRNA downstream 179260 12546334 ~ 12560531 (+) False LOC103025394
TU138581 other upstream 1071435 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1840090 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3532319 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3647015 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5219910 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1561991 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1893551 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2251561 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2323969 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4084101 16451175 ~ 16458209 (+) True G104000

Expression Profile