RNA id: TU139075


Basic Information

Item Value
RNA id TU139075
length 459
lncRNA type intronic
GC content 0.41
exon number 3
gene id G102907
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12366250 ~ 12368274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaattatagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagaaacagcctagcaacagcttagcaaccacattagaaacaatagcaactgcctaacaaccacttagcaacaccttagcaaccactaggaaaacgtaagcaactgcttagcaaccacttagcaaccacttagcaaccatgtgtaATACATTAGCAAATAACTatcaaccactgagcaacagcttagcaaccacctgtaagacgttagcaactgcctagcaaccactttcaAGATTTTAGCATTtatccaaatgtttttagatttcagggtttaaccaaacatttttagttttcagcgtttaaccacaCATTTTTAGATTTCCGTGTTTTTGGCATTTAGcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139071 lncRNA upstream 341 12366250 ~ 12367074 (+) True G102907
TU139073 lncRNA upstream 341 12366250 ~ 12367074 (+) False G102907
TU139076 lncRNA upstream 341 12366250 ~ 12367074 (+) False G102907
TU139053 lncRNA upstream 43831 12319012 ~ 12323584 (+) True G102901
TU139052 lncRNA upstream 53391 12311224 ~ 12314024 (+) True G102900
TU139054 lncRNA downstream 10817 12379091 ~ 12382633 (+) False G102902
TU139055 lncRNA downstream 10817 12379091 ~ 12402254 (+) True G102902
TU139092 lncRNA downstream 45892 12414166 ~ 12414973 (+) True G102916
TU139094 lncRNA downstream 48145 12416419 ~ 12422817 (+) True G102917
TU139117 lncRNA downstream 115348 12483622 ~ 12522292 (+) False cryzl1
XM_007251327.3 mRNA upstream 308961 12056110 ~ 12058454 (+) True arl11
XM_022674708.1 mRNA upstream 342651 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 345188 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 370688 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 733640 11631733 ~ 11633775 (+) True LOC103035965
XM_007251339.2 mRNA downstream 143443 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 143443 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 144917 12513191 ~ 12522303 (+) False cryzl1
XM_007251347.3 mRNA downstream 167006 12535280 ~ 12539566 (+) True cbr1
XM_022674726.1 mRNA downstream 178060 12546334 ~ 12560531 (+) False LOC103025394
TU138581 other upstream 1072600 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1841255 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3533484 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3648180 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5221075 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1560791 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1892351 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2250361 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2322769 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4082901 16451175 ~ 16458209 (+) True G104000

Expression Profile