RNA id: TU139092


Basic Information

Item Value
RNA id TU139092
length 620
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G102916
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12414166 ~ 12414973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTCACTCAGGCGCCCCACTCTGAGGAAAGGTGCTGCCATTCCTGGAGTGTGCAGAAAACCAGCTTCCACTGCTGGACGTTTCCTCCTCCTGTTCCACCAGactctctctctctctctttctctctctcttcgtggTGGTCTGGTGTCTCTGGAGGTGGCCACACGTCCACACTGTGTCTTGGTCACTTCTTGTCCATCTGACTGGACTGGGGGTGAAGTTAAAGGATTAAGAAGGACAGACACTGATTTAGAAACACGCAGTGAAGCTCAGACACACAGCAGGGCTGCAAGGAGCTGAGGGGAAACTACGTGCAGCAGTGGTTGTGTAACCTGACAAACACGCCCCCTTAAAAACATGAGCTCTGACTGAAACACTGAGACGCAGCGGGGTGTTTTTTACACTCCACATAAATAAGAGAGACTTCACCGTGTCAGCCCGCCATTATCTCCTCCTCAGAAGCGCTGAAATTAAGCTAATCTTATAAACGCTTATCTAATGAACACGTGCGGCCTGCAGAGGGCGCTCccgccactctctctctctctacactaataaacactcagacatgtataaagtactagtgACCCAGACTGCTTCCAGAAACTTTAcctactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139055 lncRNA upstream 11912 12379091 ~ 12402254 (+) True G102902
TU139054 lncRNA upstream 31533 12379091 ~ 12382633 (+) False G102902
TU139080 lncRNA upstream 45892 12367302 ~ 12368274 (+) False G102907
TU139075 lncRNA upstream 45892 12367415 ~ 12368274 (+) False G102907
TU139072 lncRNA upstream 45892 12367512 ~ 12368274 (+) False G102907
TU139094 lncRNA downstream 1446 12416419 ~ 12422817 (+) True G102917
TU139117 lncRNA downstream 68649 12483622 ~ 12522292 (+) False cryzl1
TU139239 lncRNA downstream 211226 12626199 ~ 12740168 (+) True G103023
TU139242 lncRNA downstream 239628 12654601 ~ 12676518 (+) True G103025
TU139295 lncRNA downstream 352243 12767216 ~ 12783303 (+) True G103067
XM_007251371.3 mRNA upstream 35204 12357030 ~ 12378962 (+) True LOC103032463
XM_007251327.3 mRNA upstream 355712 12056110 ~ 12058454 (+) True arl11
XM_022674708.1 mRNA upstream 389402 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 391939 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 417439 11986919 ~ 11996727 (+) True LOC111193615
XM_007251339.2 mRNA downstream 96744 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 96744 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 98218 12513191 ~ 12522303 (+) False cryzl1
XM_007251347.3 mRNA downstream 120307 12535280 ~ 12539566 (+) True cbr1
XM_022674726.1 mRNA downstream 131361 12546334 ~ 12560531 (+) False LOC103025394
TU138581 other upstream 1119351 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1888006 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3580235 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3694931 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5267826 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1514092 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1845652 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2203662 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2276070 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4036202 16451175 ~ 16458209 (+) True G104000

Expression Profile