RNA id: XM_022674725.1


Basic Information

Item Value
RNA id XM_022674725.1
length 2414
RNA type mRNA
GC content 0.40
exon number 14
gene id cryzl1
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12483622 ~ 12522303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctggcACGTCTTCAGATTAAGCTGGAAAATAGGTagcggttagctagctaacgttaacggCCTTTGCTGTGCTTTTAACGGACAGCCAGTATGAAAGGACTGTATTGCAAGCTGAGTGAAGCTGGAGAGGTTAAGTTTATTATACAGGACACGAGCCTGCCGACAGCTATCGGGAACCATCAGGTCAAAGTTCAAGTTAAAAGCTGTGCTCTGAGTCATGTTGACATAAAGttgcgtGAGGATTTAAAGCTGCAAAGTGAACATGTGCCAGTTGGACGAGAGATAGCAGGAGTCGTGCTCCAAGTTGGGCCCAAGGTGACCTTTTTCCAGCCTGATGATGAAGTTGTAGGAATCCTCCCCCTGGATGCCGAGGTGTCTGGTCTCTGTGATGTTGTCCTTATAGATGAATATAATTTAGTTCAGAAGCCTGAAAAGGTGGGCTGGTTTGAAGCTGCTGGAGCAATTAAGGATGGCCTCAAGGCCTACACAGCTCTACACACTCTGGCTCGGATAGCTGTGGGACAAACGCTACTAGTGTTGGATGGTGCGAGTCCTTTTGGACTCCTGGCCATCCAGCTAGCCCACTACCATGGGGTAAAAGTCCTGGCTACTGCCGTGTCCCCTGAGGACCAGAAGTTTCTGGAACAGCTCCGGCCGAGTTTGGGTGTGCTGGAATCGCTTGTAGccaGAGTGATTGGAGTGTGGGATTTAAAGGTGGACCTAGTGGACTTATGCCTGGAAGAAACTGGAGGACTAGGAGTGGATATAGTCATTGATGCTGGAGTGCGGCTTCATGAAGAAGACACTGAAGAAGTCAGGAATCATCTCCCACACAAACATGATATCATCAGTCTTCTTGGAGTTGGAGGACATTGGGTCACCACAGAAGACAACTTGCAGCTGGATCCTCCAGACAGCTGCAGTCTCTTCCTGAAGGCAGCCTCTGTGTCCTTTCTAAATGAGGAGGTGTGGGAGGCATCCAGGGCCAGACAGGGCAGATATATCCATATAATGAAGGATGTGGTGGAGAAGCTATCAACAGGAACCTTCAGgcCACTAGTAGAAAATCCTGTGCCTTTGTATGAAGCCACTGTTTCAATGGAGATGGTGCAGAGAAGACAACTCAGAAAGCGAGTCGTGGTGAAGCTTTAGGGGGAAGATTCTGGAACTACAAATTTCATCATTCCATGATAAAGGGACTATATATGCATATGATGAGGATAACTTTCTCAGCAGTcagtatatgtatgtgtttatttgcattgtgGATGGATTGTGGATGGTCACTTTTTTCATCTTTATTTAGGATATTcatcatataataaatatgtttaaataaaaaaatcatcatcaaTGAAATGGTTGCAAAAATAGTTAGACAtaaattagggctgtcaacgttcAAAATCAGTAacgcattaattttttttacgtaaataATTACACCACCAGGTTTGACCCGAACTTCCTGCCAAACTGACTTTTTTCTGGAGTGGTTCATTTATGGTGAGATCGTGATTTGATCTttatccgacccagctatcaaatatacttcttttcaATTGAGCTGAACTGCTGATTAGCCGCAGactaatctgatatattatttAGATAATCTACTGCTATGAAAAATGCTGCTCCATGGTGTTTCCACATGCAGtaatgtgcagcattcactgctcacatcagcGTTCTGTGTTATagcagcttcacactgaacagatatacacactggaacacagaatcttctcactattatttactttattgctCCAGCACcggacagctctgaccaatcagaggagacaatgtgctcgcctggtttattggtgcacattttggtacGTTTAGGTTTGTATCTGCgtgaaatcaaaccaaacagagggagaaaacgcttcaaataaacaaactcattaactgatccggaccataaaaacttttaaacaacCAATGCTGAGTGGGTTTTATCTCGCCTctaacatacaagtatatactagtgttttaactgacaccactaatataaatataaatataattgcattttaagcTTCTTACATTcataaatatccactataaaaacttgcatcttaagaTAAACAAATACGATTAAACAGTCACTAATTTCCGTCTTGTCggttggtgaaaaaaaaaaatttgatgagaatgtgtaatttaatttgaaacatatattttaatatgtggCTGAAAAgttgcattttaataaaaaaaagtgggcACAACATTGTAGACCAATTTAAACATGAAGTACAGTTAAcagtttcaatttttttttatcttttattatataaaacattgtaACATGTATCTGATTAAACATTTCAACATGACAAAGTCACATACCAAAAACCCTGCTTGTAATTGCTTCTTTTGAtcataaagtcttttttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139094 lncRNA upstream 90374 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 98218 12414166 ~ 12414973 (+) True G102916
TU139055 lncRNA upstream 110937 12379091 ~ 12402254 (+) True G102902
TU139054 lncRNA upstream 130558 12379091 ~ 12382633 (+) False G102902
TU139072 lncRNA upstream 144917 12367512 ~ 12368274 (+) False G102907
TU139239 lncRNA downstream 103896 12626199 ~ 12740168 (+) True G103023
TU139242 lncRNA downstream 132298 12654601 ~ 12676518 (+) True G103025
TU139295 lncRNA downstream 244913 12767216 ~ 12783303 (+) True G103067
TU139296 lncRNA downstream 252951 12775254 ~ 12782304 (+) True G103068
TU139294 lncRNA downstream 253774 12776077 ~ 12783303 (+) False G103067
XM_007251371.3 mRNA upstream 134229 12357030 ~ 12378962 (+) True LOC103032463
XM_007251327.3 mRNA upstream 454737 12056110 ~ 12058454 (+) True arl11
XM_022674708.1 mRNA upstream 488427 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 490964 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 516464 11986919 ~ 11996727 (+) True LOC111193615
XM_007251347.3 mRNA downstream 12977 12535280 ~ 12539566 (+) True cbr1
XM_022674726.1 mRNA downstream 24031 12546334 ~ 12560531 (+) False LOC103025394
XM_007251348.3 mRNA downstream 24033 12546336 ~ 12561111 (+) True LOC103025394
XM_007251350.3 mRNA downstream 46276 12568579 ~ 12733197 (+) False bcl9
XM_007251349.3 mRNA downstream 137950 12660253 ~ 12733197 (+) True bcl9
TU138581 other upstream 1218376 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1987031 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3679260 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3793956 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5366851 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1406762 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1738322 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2096332 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2168740 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3928872 16451175 ~ 16458209 (+) True G104000

Expression Profile