RNA id: TU139242



Basic Information


Item Value
RNA id TU139242
length 371
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G103025
representative True

Chromosome Information


Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12654601 ~ 12676518 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GAAAGATCTCagaataaacactcccCAAACCcctcgctctcagaaaagcatctaaaaagttctgctcaggtttatataggaaagatctctgagtaaatgctccatgttagcctagttcagcttcgtcttcatccataatctcgacAAACAATACGCTcttttcctctagctatatgcctgggatcttaaaccaaccaacctcgtgacgtcaccagtgctgcacgggcaacatggcggcgccctagctcaaacgtaacaaacataaatatattataatttagtgtgtaaacattttatataaaaaaaatcccccccaaataaatgccattatatttaataccttagaaaacttgtacaaactgaaatgtttc

Function


GO:

id name namespace
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139117 lncRNA upstream 132309 12483622 ~ 12522292 (+) False cryzl1
TU139094 lncRNA upstream 231784 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 239628 12414166 ~ 12414973 (+) True G102916
TU139055 lncRNA upstream 252347 12379091 ~ 12402254 (+) True G102902
TU139054 lncRNA upstream 271968 12379091 ~ 12382633 (+) False G102902
TU139295 lncRNA downstream 90698 12767216 ~ 12783303 (+) True G103067
TU139296 lncRNA downstream 98736 12775254 ~ 12782304 (+) True G103068
TU139294 lncRNA downstream 99559 12776077 ~ 12783303 (+) False G103067
XR_002650548.1 lncRNA downstream 105081 12781599 ~ 12783058 (+) True LOC111193478
TU139318 lncRNA downstream 140740 12817258 ~ 12817489 (+) True G103086
XM_007251348.3 mRNA upstream 93490 12546336 ~ 12561111 (+) True LOC103025394
XM_022674726.1 mRNA upstream 94070 12546334 ~ 12560531 (+) False LOC103025394
XM_007251347.3 mRNA upstream 115035 12535280 ~ 12539566 (+) True cbr1
XM_007251340.2 mRNA upstream 132298 12511717 ~ 12522303 (+) False cryzl1
XM_022674728.1 mRNA downstream 85748 12762266 ~ 12767170 (+) True LOC103027506
XM_007251357.3 mRNA downstream 109240 12785758 ~ 12815661 (+) True LOC103028151
XM_007251358.3 mRNA downstream 141668 12818186 ~ 12833144 (+) True LOC103028459
XM_007251363.3 mRNA downstream 160641 12837159 ~ 12846645 (+) True stn1
XM_022674730.1 mRNA downstream 174483 12851001 ~ 13032506 (+) True sh3pxd2a
TU138581 other upstream 1359786 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2128441 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3820670 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3935366 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5508261 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1252547 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1584107 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1942117 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2014525 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3774657 16451175 ~ 16458209 (+) True G104000

Expression Profile