RNA id: TU139294


Basic Information

Item Value
RNA id TU139294
length 412
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G103067
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12767216 ~ 12783303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACTGTCTATAATTAACTGTGgccaacaaaaataacaaaatactgGTTAATGTATAGGCTGTTCATTGTTGTTTTCAAGGTCCCTGCAGTGATCACCAGCAGAAGGCGCCGTAACAAAAGttataaagagaaaataaattcaGTCTACTATGCATATGCACAGCACCAGACATCAAACTAACCAACGAGAAATCAGGTTAAGTTCAACAGCTTCAATAAAGTGCAATGACTCAAAAACTGCTCTTCCAAAAAGCTGTACTGgaagttaaagggttaaagcatGGTAAATACATATGCTGTAACTtatctttactgttaaaatattttatgtctCTCTTTAAGAGATATTTCTGCACTTTGTATTTACATTATACTGTGAACTGTTAAtgttataacaaaaaataaacactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139239 lncRNA upstream 35909 12626199 ~ 12740168 (+) True G103023
TU139242 lncRNA upstream 99559 12654601 ~ 12676518 (+) True G103025
TU139117 lncRNA upstream 253785 12483622 ~ 12522292 (+) False cryzl1
TU139094 lncRNA upstream 353260 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 361104 12414166 ~ 12414973 (+) True G102916
TU139318 lncRNA downstream 33955 12817258 ~ 12817489 (+) True G103086
TU139336 lncRNA downstream 235545 13018848 ~ 13019168 (+) True G103102
TU139325 lncRNA downstream 243878 13027181 ~ 13032456 (+) False sh3pxd2a
TU139368 lncRNA downstream 250928 13034231 ~ 13034919 (+) True G103130
TU139371 lncRNA downstream 257337 13040640 ~ 13045883 (+) True G103133
XM_022674728.1 mRNA upstream 8907 12762266 ~ 12767170 (+) True LOC103027506
XM_007251350.3 mRNA upstream 42880 12568579 ~ 12733197 (+) False bcl9
XM_007251357.3 mRNA downstream 2455 12785758 ~ 12815661 (+) True LOC103028151
XM_007251358.3 mRNA downstream 34883 12818186 ~ 12833144 (+) True LOC103028459
XM_007251363.3 mRNA downstream 53856 12837159 ~ 12846645 (+) True stn1
XM_022674730.1 mRNA downstream 67698 12851001 ~ 13032506 (+) True sh3pxd2a
XM_007251359.3 mRNA downstream 67698 12851001 ~ 13032506 (+) False sh3pxd2a
TU138581 other upstream 1481262 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2249917 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3942146 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 4056842 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5629737 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1145762 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1477322 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1835332 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1907740 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3667872 16451175 ~ 16458209 (+) True G104000

Expression Profile