RNA id: TU139336


Basic Information

Item Value
RNA id TU139336
length 321
lncRNA type intronic
GC content 0.56
exon number 1
gene id G103102
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13018848 ~ 13019168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccatttttctccccaatttacacggccaattacccaacccactcattaggactccccctatcactagtaatgccacaacacaccaggagggcaaagactaacacatgcttcctccgatacatgtgaagccagccaccgcttcttttcgagctgctgccgatgcagcattgccgagcagccaccgcgcttggaggaaagcacagcggctcagctccggtacatcagctcacagacgccctgtgctgcagacattaccctaggagtgatgtggggagagagcgccatctacccacccagagggagcagggccaattgtgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139318 lncRNA upstream 201359 12817258 ~ 12817489 (+) True G103086
TU139295 lncRNA upstream 235545 12767216 ~ 12783303 (+) True G103067
TU139294 lncRNA upstream 235545 12776077 ~ 12783303 (+) False G103067
XR_002650548.1 lncRNA upstream 235790 12781599 ~ 12783058 (+) True LOC111193478
TU139296 lncRNA upstream 236544 12775254 ~ 12782304 (+) True G103068
TU139325 lncRNA downstream 8013 13027181 ~ 13032456 (+) False sh3pxd2a
TU139368 lncRNA downstream 15063 13034231 ~ 13034919 (+) True G103130
TU139371 lncRNA downstream 21472 13040640 ~ 13045883 (+) True G103133
TU139409 lncRNA downstream 193229 13212397 ~ 13213927 (+) True G103163
TU139413 lncRNA downstream 193797 13212965 ~ 13213927 (+) False G103163
XM_007251363.3 mRNA upstream 172203 12837159 ~ 12846645 (+) True stn1
XM_007251358.3 mRNA upstream 185704 12818186 ~ 12833144 (+) True LOC103028459
XM_007251357.3 mRNA upstream 203187 12785758 ~ 12815661 (+) True LOC103028151
XM_022674728.1 mRNA upstream 251678 12762266 ~ 12767170 (+) True LOC103027506
XM_007251349.3 mRNA upstream 285651 12660253 ~ 12733197 (+) True bcl9
XM_022675033.1 mRNA downstream 206133 13225301 ~ 13429937 (+) True cfap58
XM_022674734.1 mRNA downstream 560959 13580127 ~ 13590984 (+) True LOC103043054
XM_022674735.1 mRNA downstream 560959 13580127 ~ 13590984 (+) False LOC103043054
XM_022674739.1 mRNA downstream 611449 13630617 ~ 13665746 (+) True LOC103024001
XM_007242329.3 mRNA downstream 654130 13673298 ~ 13676357 (+) True LOC103023667
TU138581 other upstream 1724033 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2492688 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 4184917 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 4299613 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5872508 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 909897 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1241457 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1599467 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1671875 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3432007 16451175 ~ 16458209 (+) True G104000

Expression Profile