RNA id: TU139371


Basic Information

Item Value
RNA id TU139371
length 5197
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G103133
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13040640 ~ 13045883 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCGCAGTTGATTTCTGAAATTGAAATTTGAGTTATAACTCGAATCGCTAGTTTTATTTTGGGCTAAaccagtttaacagtttaatatATCTTTACTTCCACACTCTGATTCTGAAATCACATCTATTGCTTGAAGCTTTCTGCTTTTAGAAATGATGGAGCACGCTGATCTGATATCTAAACTAATCAGAttgtttgaataaataaatcaccCACAGGCTCTGGGAGGAGGTATAAAACAGGGCGGGGCAGCAGAGAGGAAATTACAAAAGCAGGCTGAAACTAAAGGGACGGTACGTTAGCGCAGGACTGCGCTTATCTTGTAGCTGGAAGCGACGGGTTTTGTGATGGTTTACTATGGTTTAGATTTACTGCACAGCACAGCCTCGCAGGTACGAGATAGCATCACCCTCTTCTGTTTTCAAGAAATACAGTGCAGTGTAACCCAGAGAGGAGCACgcaacaaacaaatacaatcatcatcatcaatccaACCGTAGCCAAGCGATTAGAGGAACACCTTGGATACTGCTATTCTAATCATCACTTCAAGCGACGGCGGCACACGCCATAGAAATAGTGTTGTATCTTTATCAGCAGAGGAGAAGAACCACTGATTCCGGCTTTCCAGCGCCTCCACTTAAATCTCACGAGAACCGGAGCTGAATTTTTACTGCCTAGAACAATAAAAAGGACATCCAGCGTTCaaatatatgtacaaaaaaacCTAAACTTCCTAAACTTCCCAAACcgctgtttttctattttatagtGACCGCAGCGATAAAGTGTATGAGAGTGAGGATGTATAACGCACATGTTTTTTAAGCATtgcctgaataaaaaaaaataaaaaaagagttggCTAATGCTTTAGCAGCAGATTTGAGCCCCAGTTGTCACAAATGATTCACATTAAGCTAACACGCTAACCACGACAAGCTAATCACTGACACTGTCCATGAAATGTAGCCAAAGTACTGCAGAATCTTCCTTAGTTTAATATGATGATTTTAAACTAGGACACGCAGTGTCACTGATGCAAAGCACCATGCGAGAGGGAGTGAGTTACACGCCAGGTCCATGAGTATCATCATATCATGCTGTTACAAAGCTAGCCAGAGCTAACCTCAGCTACTTAATGATCACTTGTCCATGAAATGTAGCCAAAGAACAGAACAAAGAGTTCTGCAGAGTCTTTCCCAGTTTAACGTGATAACTAGAGCTGGGATCATGATCCTAAACTAGTGTCACTGATGCGGAGCACCATAAGCCAGGTGCTTGAGGTGCTTTACACCTGAAAAATCATCAGATTTTCCAAATACATTATCATGTCATGAtgtcagtaagtaagtaataaGTATGTTTGTTGTCTTCTACTAAAATCGTAGCAGAGAAAGAACCTACATAATATCTGTGTTCCAAAGCTTAGGCTGCAACCAAGGTGCAGCACATCCGAGCTGCATTTTACGGCCGCTGTGAGTAAAGAATCTTTTGTATGCAGCCTAGAAATGCCGCCTACGTTCCGAGcaattttgagggcacagctGATGTATCTTTTCAGTCACTCAGTTACTAACAGTTCACTGTGCTCAAACAACGCAATGGGAAAGATCAGTAAGGGTGCAGCAAATATTCAACAACAAACTCTTCAGCTGTAAACGGCAAAATATGATTTTCAAGATTTGGCAGAATAAATTATACTGAACAATGACTCAACTCTTTTGGTTTGTCAGCTCaaatcttaaaaacaaaaagcatttttaagctATAGAATTCATGcaatagtgaaaaaaatagCATAATTACTGAAAATGTATGTGTTGAAAATAATGTGTTCAGTATCCAGTATTCAATAATGCTTACCAAGCTAGCATACATTTTAATTGGTGGTAGGTCATTTTTTAATCAAGTTGACCAAATATCTAATGAATAGGAGTTGATTGCCGGAGGACCTGTCCTACCTCAActgcagcctaggctttggaacATACAAGAATTGATTATAATGCTGGTCACCAACACCATCAAAATTACATTTCTCtcaaaatagaaccctgtgggactccacaaaaCATAATAAACCAAATGGTTACAGTTTCTGCTTTagaattaaaaactgaaaagtttTCCAGGTGTAATAGCATGTCATAGCTAATCCTGCACTTTAACCCTGACTTTCCTAGATGGAATATTCAAGGAGAATTTGGGTGCACTGTAAAATTATATCAACATTAAAGGTCCTTACTTTATATAAAACTGCCCAAAGCCTATTTCACAGTAGTTGACGTTAATTTTGCAACTAGTGGTGGAAGAATGAGTGTAAATTAGTGTAAATGTGACTGGTTTAATGTTGTAATGGACTTCATACACTCTTTTGACAATTTTGCTTTTGACGAATGCTAAACGCACCCTgaaaataattgaatataaaacgttttttttttatgtagaaaGATTGGCGACAGAGGCGGCATTATTATGACATTATCAGTCAGATATCATCTCAGACTGTTCAGTCTATGGCTAAAACCACTCCAATTCTGTCTTAGTGTCTctgatttagtgttttttttaaggcaaatgACTTTTCATTGAAAGACAGGATAAAGTGAGTCAGTGTTATAATTCATGTACAGGGTGAGTCAAAAGTCAAAGAacacccttttatttcagaaaggAAATCTGATAGCTTTCGCAATGGTGGCCATGTTTCGGACATAGTCTAAAAGATAGGCCCCCTGATCTGTTATTTGCTGGAGTATTCAGATATGTCGTCTTCACTTTCATTTCTTACTTTCTTAACTAATTCAGTATTTCacttttttgcatttctttCAAGATCAGCAGGAAAATATGAACCAGCATTAAGTCAAACAAATGATTTTTCCCTCCTTCTTCCGATCTCTCACAGCGATCTCTTCTTTCCTCTGCTTTATTTTGTTCCCCAGTGGCCTTGAGTAGCTGTTCTGTAGCGAATAAGGAGGGTACTCAGAGAAATATGGATTAACACGGCAAATCAAATAGCCTCTCTCTCGCCACAAATGATCCTTTCATTGTTTAAGGCCTCAAGGCTATGCTCTTTCGTCTGTGATTTCGGTCGCCATGGCCACTGCATGCGCAGAGCGCTTCAGGAAGCTTGTTTTGAACACTCGGAATGGCGAAACTGACTGAGTTTGTGGtgaatttttttctttgattacGGCTCTGTCTCGACTTGGGCTTAAAATCTGATTACTTTTGAAAGATGTTGTTTTTCCTCTCTGTGGGAACGTGTGTTCCAGTCCCTGTTCCAGTTCATTAAATATGAATCTTCTTAATGAAACCTTTATAGCAAGTTTTAAGAGACAGAAATTAAGCCTAGTCTGAAGCCATATTCAAAAGGTATTGGATTTAAATGAGGAGGTGGACTAAGGAGTATATAAGTGTAAATTTAAGGTGTCATCACACCTACAAGtctaaaataaaggttaatgtGTTTGTATATTAAACATTGCATTAGTTTATTCTAggttaatttgattttacacTGCAATTTGACATACTTTGCTACATCATGTTGGCATCGATTGATTTGTAGAATCTTGTCAGTTCAGCGAGTTGCCCtttcaggtgttgtgccaaattctgtcCCTCTGCAAGAACCACCCTCAGAGGGAGTCCCCCGGATTCCTTCTTATTCTACAGCTACAgaagatacaggaatcaccagcataGTATAGAGGACTGGATTCTGAAACACCATTCTGAACAGTTTAAAGGTTGATGACGGTCTTATGTACCTTTActttcctgtaattggtccaaatATCTGAACCTTTtagaaaagtgcttttaaaCCTCCCAAAAAACAGTCCATGGTTTAGTTGATTGGTACTCCACCTCCTCAGGTACAGTAAAACTAATCCCATTTGAATAGGGAtttccttttaatggaaaatcttcAAGTCCAGACTAGGCTTaataatccctgtctgggagaCTGAGCCTTAATGCTTGAATGACAAGCATTAGCATTTATAGcattacagcagcagcagcaaaaagCAGGAGAACAACACTGACTCCACACGGGACAACTGAGAGACCTTTTTAGATTATACATTGCTTCACAGAACATCGCGCTTTAGTCCTTGAAGGTCCTCACACTCATTAAACTCAACTCAACAGGGCAATACTGGCTTTAGAGCGTTGAGCAACAGCAAGATTTAGTACtcttaagtgtgtgttttttgttttatctcttCCCCAAGTTTCATCTGTACACAGGCAAAAAATGTGACCCTGAAACCTTTTGAGAGCTTCAAGCCGAAGCTAGAAAAGATAAAATCGACTTCCCCAAACTATGTTAGACGCCTACGTTAAATACAACCCACGTCTTGCTTCCAGCTGGAGAACTCCGCACCTACGAAGTGGACGAGACTCGCAGAGAGAGTTGTCGTATGGCTCATAGAGAGGGGAAACGAAAACGGGAGACGCTGCGAGTGTGACGTCTCCTGAGCATTGTCTGCAGCTTCCTGAATTGTTGGAGGTTATTTACAtgatttttctttccttttccttgcgtgtgagtgtgtatatgtatgtgtgtgtgtatatatgtgtgtgtctatggAAAGCTTTAGTCAGAATCTCAGCCTCCTGTCCTGAGTTGCGACACGGCCAGTGACCGTCGCAGGCATGGCTCGCACATTAAACACAGCAAAGAACTTTTTGCGGATGGATGCCTGAGCCTTTGATGTCCAAGGTTCAAAAGTCATCAGCGTGGGAGCAGAAAAGCCCATGAAtgtatcagagagagagagaggaagtccCTGAAGTGCGACGCCTCCTTCCTCAACGTACGAGAGTCTCTTTGTGTCACGGCCTCTGTGGGGCTCCGTATGTGTTAGAAAAGAAGGACACGCCTCCTATGTGCTCCGGTAGGTCTTTATAATGTCTTTAATCGCCCTCCTGCAGATCGGACAGCAGGCGTTGGCCATCTTTTTGAGGCGCAGGCCGCAGGTGTAGCAGAGACACATGTGACCGCAGGCGTAGATGACCGTGTCCACGGCGTTCTCGTAGCAGATGGAGCACTCGTCTGGCCATGAGCTGGAGGATGAGGGGAAGGTGGGGGATTTGGGGAGGTTGATGGGAGAACTCGGGTTTGTTCCTTGGGAAGAAGGAAAGTGATGGGGtaagaaagagaatgaaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139368 lncRNA upstream 5721 13034231 ~ 13034919 (+) True G103130
TU139325 lncRNA upstream 8184 13027181 ~ 13032456 (+) False sh3pxd2a
TU139336 lncRNA upstream 21472 13018848 ~ 13019168 (+) True G103102
TU139318 lncRNA upstream 223151 12817258 ~ 12817489 (+) True G103086
TU139294 lncRNA upstream 257337 12776077 ~ 12783303 (+) False G103067
TU139409 lncRNA downstream 166514 13212397 ~ 13213927 (+) True G103163
TU139413 lncRNA downstream 167082 13212965 ~ 13213927 (+) False G103163
TU139406 lncRNA downstream 167111 13212994 ~ 13214385 (+) False G103163
TU139407 lncRNA downstream 167111 13212994 ~ 13213927 (+) False G103163
TU139412 lncRNA downstream 167111 13212994 ~ 13214385 (+) False G103163
XM_007251359.3 mRNA upstream 8134 12851001 ~ 13032506 (+) False sh3pxd2a
XM_022675033.1 mRNA downstream 179418 13225301 ~ 13429937 (+) True cfap58
XM_022674734.1 mRNA downstream 534244 13580127 ~ 13590984 (+) True LOC103043054
XM_022674735.1 mRNA downstream 534244 13580127 ~ 13590984 (+) False LOC103043054
XM_022674739.1 mRNA downstream 584734 13630617 ~ 13665746 (+) True LOC103024001
XM_007242329.3 mRNA downstream 627415 13673298 ~ 13676357 (+) True LOC103023667
TU138581 other upstream 1745825 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2514480 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 4206709 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 4321405 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5894300 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 883182 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1214742 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1572752 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1645160 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3405292 16451175 ~ 16458209 (+) True G104000

Expression Profile