RNA id: TU139678


Basic Information

Item Value
RNA id TU139678
length 2552
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G103349
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13888907 ~ 13910343 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACCCATGTGTACATCTAGTACTGGACAATTCCCAACTAGCTGACTATACGAAGGGCGGTTAGTGACTGAGCCAGACCCTTCTGATCCCAGTGTGTGGCTCTGCACACTGGGGAGTTCTAGTTTTCCGACTGCACAGTGGAATTGCTACGGGGGGTTATAGGATTAGGCCTATTAGTACTCTGAGGAGGCGCGGCTCGGCAGTGACGGGCAATGTGACCTGATCCATCACACCTAAGACAAATAGGCTGGCCATCCGGAGTACGTCTAAAGCGATTGTTTCTAGATGTAAAACCTGAAGCACTACTGCTAGAAGGGCGAAAATGTTGGACCAACATATCAAGTTGGGCTTGCTGTCTTAAGACCATCTCTTTTAAGTCTGCCAATTCAGAAGTTTGAGCAATAGTAGCCTCACACTGGGGCACAAACTGAACTTCACTATTGCGTGGTACAGCACGCTGACCCCGATCCCGACCTGACTGGCCCTCCTCCATCCACCTAATAGCCTCCCGCCTAACCCCTAAGAGAGATATATCCCCATTATCCCGCACTAGTCTTTTGAGCTCTCTACGTAACGTATGGTCCCTAACATTCTCGCAAAATTGGTCCCTTAAAACTTCACCAGAATTTGGGATAGCATCagttttacactgctttactcTGTCCATGAGTTCCATTAGAGCATGAGAAAATTCAAACAAAGACTCATTCTCCCTTTGTTTACGATCAAAAAAACGCTGTTGCCAATACACATAGGACTTAGTACACCCATATACCTCctttaaaatactaataatcTCCTCTGGGTTTTCTCTGCTTGCAGTAGGCCGATACTTTATTTCATTACGAGCCTCACCCTCCAAATGGTCATATAAAAACATAGCTTTATCTAAAACAGACAGGTGTCTAGACCTTATACAACTTTGTGCCTCCTCAACCCATTCCTCCACTGAATGGGCCCCAGCAGCTGTTGAACCAGAGAATTTAGGACACTTCCTTTCTCTAGGTAAGTAAAAGGCCTGTTCCCGCCGTACAGATGGGGTTTCATTGTCTCTAAAGTTATCCCCAGTACCTCCATTTTGTGACCTAGAAAGTCTCTCATTTGCAGTTTGGAGCTGTCCCACTTGCTCCCGTAGCCTCTGCAGCTCTTCTTCCATGTGGATTCCTTGCGGATAGGGCCCTCTGTGTTGGGATGCCAGCTGCTGTTTTCtataccaaaaaaatttttttttttttttttttttaaatcacgcTAACACTGCTCAAAACTCTACTCACACCTTCATAAATAAACTGACAGGAAAACAAgaaagtaacttaaaaatagTTCGACCCTGCCGACTACGCCAGATTGTAGCGCCCCCTAACTAGGGGTTACCAGACTACGCCACCCcttaaattacttattttatttagagtaagGGGAACTCTCAAATAAGACACAAGAACTTGACTGTAGTACAAAATacaatgatttatttaaaaccGTACCAAAGTCAAATCTACTGTCAGTTTCATTTATTGGGTgagaggaaatatatatataaaaatttaagaaaatCACAATTTACCCATGACCACTGGGTCCAGGGTATGGAGAAATATGAAGTCAATCCAATAGGACCAAAAGAACACACGTGAATAAAGTTTACTTAATCACTGCACagcaaacttaaaaataaaataaactaagtacaaaaaaaagaatcacaCTTCTAGTGAACAGGACTTAGCCGAATATGGTTGACTCCAAACCCCCAGTCCCAGTAACAATTATAGCCACAGCTAAAATTGACTAATTGTACCACATGGTTACAAATAGGCTAGAGTCTATACAGAGCACATAGTTAAAAACcacaatacttaaaaatacCTGAGCAGTTAATACACTTAGTGCTACAAAATTTATGgtagaataaacaaaaaaaataaaaaaaagaaatacaaaaaagagcagaaaacagCAACTGGCAACCACTGGAACTGTGGCTCTCTATgcaaatacacaaaacacacattaatacattCATCACATAAAAACAGTGCAACTTGCATTCAATTACCAGAAGAGACATACCACTTAACTCAAGGTGGAATGCTAACTTCGCCCATGGACAGGGTAGCAGCTTTAAACCTCTCTTATATCACGTCGCCAGGCACAAACACAgactgttgctatttatagccaCTCACAGTCGCTCAGCCTCGGGCACTCCTGTTCTCACTGAGTACTTCACTAGCTCAGAGAATCGTCTCCAGCCCACGCTGCTACTCGCGTTAGCTTAGCCACACAGTGCTACCTTCAATAGGACCCCCTATAGGTGCGTATATAAGTGCCTGCAGGACCACACTGACTCGCTAATGCTGGCGCCCTAGTTAATGACGTAACTCGTTCACGCCCCCTGCacctgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139662 lncRNA upstream 25690 13867413 ~ 13868223 (+) True G103347
TU139635 lncRNA upstream 128447 13757846 ~ 13765466 (+) True G103323
XR_002650589.1 lncRNA upstream 268467 13618450 ~ 13625446 (+) False LOC111193536
XR_002650587.1 lncRNA upstream 268467 13619923 ~ 13625446 (+) False LOC111193536
TU139530 lncRNA upstream 268507 13618413 ~ 13625406 (+) False LOC111193536
TU139762 lncRNA downstream 121447 14024292 ~ 14079252 (+) False G103389
XR_002650549.1 lncRNA downstream 158824 14061669 ~ 14062007 (+) True LOC111193479
TU139761 lncRNA downstream 174131 14076976 ~ 14079252 (+) True G103389
TU139791 lncRNA downstream 216893 14119738 ~ 14129753 (+) True G103410
TU139867 lncRNA downstream 296192 14199037 ~ 14199576 (+) True G103464
XM_022674741.1 mRNA upstream 88684 13773430 ~ 13805229 (+) True LOC103047056
XM_022674740.1 mRNA upstream 213692 13676444 ~ 13680221 (+) True LOC103023349
XM_007242329.3 mRNA upstream 217556 13673298 ~ 13676357 (+) True LOC103023667
XM_022674739.1 mRNA upstream 228167 13630617 ~ 13665746 (+) True LOC103024001
XM_022674735.1 mRNA upstream 302929 13580127 ~ 13590984 (+) False LOC103043054
XM_022674742.1 mRNA downstream 18403 13921248 ~ 13927798 (+) True eif3f
XM_022674743.1 mRNA downstream 18474 13921319 ~ 13927798 (+) False eif3f
XM_022675037.1 mRNA downstream 148959 14051804 ~ 14061543 (+) True LOC111193619
XM_022674747.1 mRNA downstream 321135 14223980 ~ 14244056 (+) True LOC103033906
XM_007241890.3 mRNA downstream 380082 14282927 ~ 14290159 (+) True LOC103031172
TU138581 other upstream 2599098 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3367753 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5059982 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 5174678 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 6747573 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 26220 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 357780 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 715790 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 788198 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 2548330 16451175 ~ 16458209 (+) True G104000

Expression Profile