RNA id: TU139745


Basic Information

Item Value
RNA id TU139745
length 421
RNA type TUCP
GC content 0.53
exon number 4
gene id G103376
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13929065 ~ 13935667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCGGGGAGGTAAAGATGGCGTCGTTTCGCTGCCGGCGGGACCCGTGCGGGTTTATCTGCCTGATTCTGACCTATTTCAGCGTGTTTTACGCGGATTACGTGGTGATTCAGTACGTGCTGATCCCCGCCTACTCCGGCAGtgtttggTGCACTCTTCATGGATCagtatttaatgttatattgttACTGCTTCTGGCATGCCATTCAAAAGCAGTGTTCTCAGACCCAGGTATGGTTCCTCTTCCTGAGACAGCTATTGATTTCTCAGACCTGAGGTCTCAGTCCAACCGTATGAATGACAGGGGCTGCGAGGGCTGGACCGTCTGCAGTCGCTGTGAAACATATCGACCCCCCCGTGCACATCACTGCCGGGTGTGTCAGCGCTGCATCAGACGCATGGACCATCACTGCCCATGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139673 lncRNA upstream 18722 13888907 ~ 13910343 (+) False G103349
TU139675 lncRNA upstream 18722 13888907 ~ 13910343 (+) True G103349
TU139677 lncRNA upstream 18722 13888907 ~ 13910343 (+) False G103349
TU139682 lncRNA upstream 18722 13888907 ~ 13910343 (+) False G103349
TU139685 lncRNA upstream 18722 13888907 ~ 13910343 (+) False G103349
TU139762 lncRNA downstream 88625 14024292 ~ 14079252 (+) False G103389
XR_002650549.1 lncRNA downstream 126002 14061669 ~ 14062007 (+) True LOC111193479
TU139761 lncRNA downstream 141309 14076976 ~ 14079252 (+) True G103389
TU139791 lncRNA downstream 184071 14119738 ~ 14129753 (+) True G103410
TU139867 lncRNA downstream 263370 14199037 ~ 14199576 (+) True G103464
XM_022674742.1 mRNA upstream 1267 13921248 ~ 13927798 (+) True eif3f
XM_022674743.1 mRNA upstream 1267 13921319 ~ 13927798 (+) False eif3f
XM_022674741.1 mRNA upstream 123836 13773430 ~ 13805229 (+) True LOC103047056
XM_022674740.1 mRNA upstream 248844 13676444 ~ 13680221 (+) True LOC103023349
XM_007242329.3 mRNA upstream 252708 13673298 ~ 13676357 (+) True LOC103023667
XM_022675037.1 mRNA downstream 116137 14051804 ~ 14061543 (+) True LOC111193619
XM_022674747.1 mRNA downstream 288313 14223980 ~ 14244056 (+) True LOC103033906
XM_007241890.3 mRNA downstream 347260 14282927 ~ 14290159 (+) True LOC103031172
XM_022674749.1 mRNA downstream 373259 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA downstream 382531 14318198 ~ 14330415 (+) False LOC103031792
TU138581 other upstream 2634250 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3402905 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5095134 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 5209830 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 6782725 7144802 ~ 7146340 (+) True G101622
TU139893 other downstream 324958 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 682968 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 755376 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 2515508 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 2566509 16502176 ~ 16507777 (+) False col17a1

Expression Profile