RNA id: TU139761


Basic Information

Item Value
RNA id TU139761
length 1937
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G103389
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14024292 ~ 14079252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgaaaaaaaagccttttttcaGAAGATACAACATTCTGTCCAGATTCAATTCAGGATTATCCACTTGCCTAAATAACCAGAACTTCaaaagaaatgtgtttaaaatattttcaaaataaaaataatttaaagcagcTTTAAGCAATACAGACGCTATTCCCCTTCggcaaaaataatttaaatatatatttagttaagTCATGTTTTCTATGTAATTTTCTgttatatatgtttgttttcttaCAAAGAAAAAGTACTTGTACTTAATCTGACATCTGACATGCtccatgaaaaaaatctatttttatatatccaATCAACAGCTACAACTTTTATTGCATATTAAACACGTCTGTAGGGAACACATGAAACAGAATATCTTGCATAATGTCTGCAAAAATGTAAGGTTTtcaattaaacacacaaaagattactgtacacacacacacacgcacacacacgcactaaAATAAACCAACATGTTCCATGTTTATAGAGCAGCAGCTGATTTTAGAAAGCACAGCAAACAGGCTTAtccaaaaaaagagaagaagaaaaagaaagggcaACAGACTGGCCTAAGAAATCAAACTGCACCAAAAATACTGTAACATTCAGACTTAAaacacatgttttaaatagacTGGGCCTAGTTCTTTAAAAGCAGTTAATATGATGTTTACTGAAAGAGTAAGAGTGCTCAGTGTGATCACACTGCTCCCCATAAACCCTGTCAATACTTAACTATACTGACTAAACAAACTACTgatctgaactgaattaaacaaGAAAACACTTCTGCAACTTTATCTTAAAACACTTGtaacaaaatgtaacaaaacattCACATTAAAGGAAACAGCATtcatattattatcattagAACTGAACTGTGTCATTGATTGGTCTTCCTTTAACTGAGAATTCTGTCAGGGTGAGATTATCTGCAATACTGTGGCTAAACTAATAGTAATGTAATAAATCAGTGTATTTACTCAAAATACAACCAATTCCCTTCATATTCATCTACCTTCACTAAAGTGAACAGAAGCTCTCCTCACTGAATTTTAGAAAACGTGATGGCTCGGGTCTCttttcTGAGTAAACACTGAGCAcactgagtttttttatttaataacaccAGCAGACTGGAAAGCTTTCCGTGTTGGGTGCTGTAAAGGTTGGTTTACGTGCTcataaatataatcaaatacGTACAGAAATATTCCACTGGCCTGCAGGTCAGAACATCAGTGTTATCAGGCCCAGATCCTCAAAAAACATTCATATTATTTAGatgtataaaacactttttaagcaCAAACTTGggaaattaaaaaagcaataaatcaGGAGAAACAGGGATGCTTCTTACAGTGATGGCCATGTCTCTAAGGGTTAACTCAGTTATGATGGAGGCTGCATGGTAACAGGATCTGAACGTTTTGGatcattttaaacactgtggCTCTTAAAAGTGCCACAACTGTTTTTGGTCCAATGCCAAAAGAAATCTTCAAACTAAAACTGGACTAAAAGCTGTTTTAGGGAATCAGGTGTGGCTGTTCTGTGGATCTGCTCCATGAAACCGTTTTTAACACCTTGTGAAGTTGGTTGGCTGTTGGTGTTGACGGTGGGTAAAAACTGGAGGTAGAActgaaatcagaaaataaaaggtTTGAGATGTTCTGCAGGTCAGAGTTCAGTTTTCTGAAGTGGAACGCTTTTCTGAATGTCCTCGTCTGATGTGAGcccctcctcctcttttttCAGCTTGCCTCCTCCTTCAGCCAGCttactctttttcttcttcttcttcttcccttTCTTCTGGCCATCCTCTCCATCTTTAGCTTTCTTtttgctcttctttttctttttgttttctgctATAGCTGCAGTGTCTCCTTTCTTCCCCAGCCACTCTTCTTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650549.1 lncRNA upstream 14969 14061669 ~ 14062007 (+) True LOC111193479
TU139677 lncRNA upstream 166633 13888907 ~ 13910343 (+) False G103349
TU139791 lncRNA downstream 40486 14119738 ~ 14129753 (+) True G103410
TU139867 lncRNA downstream 119785 14199037 ~ 14199576 (+) True G103464
TU139885 lncRNA downstream 169868 14249120 ~ 14249825 (+) True G103482
TU139888 lncRNA downstream 175118 14254370 ~ 14254846 (+) True G103485
TU139891 lncRNA downstream 179572 14258824 ~ 14259426 (+) True G103488
XM_022675037.1 mRNA upstream 15433 14051804 ~ 14061543 (+) True LOC111193619
XM_022674742.1 mRNA upstream 149178 13921248 ~ 13927798 (+) True eif3f
XM_022674743.1 mRNA upstream 149178 13921319 ~ 13927798 (+) False eif3f
XM_022674741.1 mRNA upstream 271747 13773430 ~ 13805229 (+) True LOC103047056
XM_022674740.1 mRNA upstream 396755 13676444 ~ 13680221 (+) True LOC103023349
XM_022674747.1 mRNA downstream 144728 14223980 ~ 14244056 (+) True LOC103033906
XM_007241890.3 mRNA downstream 203675 14282927 ~ 14290159 (+) True LOC103031172
XM_022674749.1 mRNA downstream 229674 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA downstream 238946 14318198 ~ 14330415 (+) False LOC103031792
XM_022674753.1 mRNA downstream 309206 14388458 ~ 14409396 (+) True knl1
TU139745 other upstream 141309 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 2782161 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3550816 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5243045 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 5357741 8714839 ~ 8719235 (+) True G102015
TU139893 other downstream 181373 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 539383 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 611791 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 2371923 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 2422924 16502176 ~ 16507777 (+) False col17a1

Expression Profile