RNA id: TU139867


Basic Information

Item Value
RNA id TU139867
length 515
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G103464
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14199037 ~ 14199576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggccacatggtgcgtgaaggagagttggtcatcaaccagaacacccaggttcctagcaacctttgtcggtgagagagagagagagtcgatgcttatagagaagttgtgttgaaaagatggttttgctggtataaccagaagttcagtctttgagagatttaattgaaggtgatgctccttcatccatgaggatatgtcagagagacactgcgatatccgtgcagagattgagtgatcttcaggtgagaatgacaggtatagctgggtgtcatcagcaaagcaatggtaggaaaagccatgtgagtggataacctgaccaagagaggcggtgtatattgagaagagaaggggacccagtaccgaaccctggggaaccccagctgtccttgccacgacaccttgaacgagcgcccagtgaggtacgatctgaaccatgacagcacattgtctgagatccccatgtttgagagtatagttaggaggatgTCGTGGTGgaccgagaggtccagcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139791 lncRNA upstream 69284 14119738 ~ 14129753 (+) True G103410
TU139762 lncRNA upstream 119785 14024292 ~ 14079252 (+) False G103389
TU139761 lncRNA upstream 119785 14076976 ~ 14079252 (+) True G103389
XR_002650549.1 lncRNA upstream 137030 14061669 ~ 14062007 (+) True LOC111193479
TU139665 lncRNA upstream 296192 13893913 ~ 13902845 (+) False G103349
TU139885 lncRNA downstream 49544 14249120 ~ 14249825 (+) True G103482
TU139888 lncRNA downstream 54794 14254370 ~ 14254846 (+) True G103485
TU139891 lncRNA downstream 59248 14258824 ~ 14259426 (+) True G103488
TU139894 lncRNA downstream 62027 14261603 ~ 14261978 (+) True G103491
TU139880 lncRNA downstream 91192 14290768 ~ 14291254 (+) True G103477
XM_022675037.1 mRNA upstream 137494 14051804 ~ 14061543 (+) True LOC111193619
XM_022674742.1 mRNA upstream 271239 13921248 ~ 13927798 (+) True eif3f
XM_022674743.1 mRNA upstream 271239 13921319 ~ 13927798 (+) False eif3f
XM_022674741.1 mRNA upstream 393808 13773430 ~ 13805229 (+) True LOC103047056
XM_022674740.1 mRNA upstream 518816 13676444 ~ 13680221 (+) True LOC103023349
XM_022674747.1 mRNA downstream 24404 14223980 ~ 14244056 (+) True LOC103033906
XM_007241890.3 mRNA downstream 83351 14282927 ~ 14290159 (+) True LOC103031172
XM_022674749.1 mRNA downstream 109350 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA downstream 118622 14318198 ~ 14330415 (+) False LOC103031792
XM_022674753.1 mRNA downstream 188882 14388458 ~ 14409396 (+) True knl1
TU139745 other upstream 263370 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 2904222 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3672877 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5365106 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 5479802 8714839 ~ 8719235 (+) True G102015
TU139893 other downstream 61049 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 419059 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 491467 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 2251599 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 2302600 16502176 ~ 16507777 (+) False col17a1

Expression Profile