RNA id: TU139962


Basic Information

Item Value
RNA id TU139962
length 585
lncRNA type intronic
GC content 0.42
exon number 2
gene id G103544
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14544504 ~ 14545929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTTATCCTGTTAGCCTTCATTATCGGTCTGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTATCAGTCAGTGCTGTCCTGTTAGCGTTTATCCTGTTAGCCTTCATTTTCGGTCTGTGCTGTCTTGTTATCGTTTATCCTGTTAGCCTTCATTATCAGTCAGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTATCAGTCAGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTAGCGGTCTGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTATCGGTCTGTGCTGTCTTGTTATCGTTTATCCTGTTAGCCTTTATTATCAGTCAGTGCTGTCTTGTTAGCGTTTTTCCTGTTAGCCTTTATTATCGGTCAGTGCTGTCCTGTTAGCGTTTATCCTGTTAGCCTTCATTATCGGTCAGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTATCAGTCTGTGCTGTCTTGTTAGCGTTTATCCTGTTAGCCTTCATTATCGGTCTGTGCTGTCTTGTTATCGTTTATCCTGTTAGCCTTCATTATCAGTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139940 lncRNA upstream 34364 14431912 ~ 14510140 (+) True G103524
TU139950 lncRNA upstream 68882 14475207 ~ 14475622 (+) True G103533
TU139925 lncRNA upstream 156808 14377759 ~ 14387696 (+) True G103517
TU139922 lncRNA upstream 168972 14374087 ~ 14375532 (+) False LOC111193540
XR_002650592.1 lncRNA upstream 169217 14373654 ~ 14375287 (+) True LOC111193540
TU139979 lncRNA downstream 78247 14623642 ~ 14624134 (+) True G103553
TU139978 lncRNA downstream 79763 14625158 ~ 14633223 (+) True G103552
TU139976 lncRNA downstream 80381 14625776 ~ 14630761 (+) False G103552
TU139977 lncRNA downstream 80381 14625776 ~ 14628009 (+) False G103552
TU139972 lncRNA downstream 81683 14627078 ~ 14630972 (+) False G103552
XM_022674753.1 mRNA upstream 135108 14388458 ~ 14409396 (+) True knl1
XM_022674754.1 mRNA upstream 135108 14388458 ~ 14409396 (+) False knl1
XM_022674749.1 mRNA upstream 214089 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA upstream 214089 14318198 ~ 14330415 (+) False LOC103031792
XM_007241890.3 mRNA upstream 254345 14282927 ~ 14290159 (+) True LOC103031172
XM_022675040.1 mRNA downstream 454060 14999455 ~ 15288847 (+) False LOC103032764
XM_007259064.2 mRNA downstream 1690633 16236028 ~ 16254238 (+) True LOC103039857
XM_007259063.3 mRNA downstream 1775727 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 1827395 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 1842661 16388056 ~ 16418412 (+) True pdcd11
TU139893 other upstream 282965 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 608837 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3249689 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 4018344 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5710573 8833840 ~ 8833931 (+) True trnar-ucu_1
TU139970 other downstream 73240 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 145648 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 1905780 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 1956781 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 2343001 16888396 ~ 16893723 (+) False LOC103035065

Expression Profile