RNA id: TU139979


Basic Information

Item Value
RNA id TU139979
length 340
lncRNA type intronic
GC content 0.41
exon number 2
gene id G103553
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14623642 ~ 14624134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgaggtgatggggtaacgttagtaacattaggataacacagggactttgaggtgatggggtaacgttagtaacattaggataacacagggactttgaggtgatggggtaacgttagtaacattaggataacacagggactttgaggtgatggggtaacgttagtaacattaggataacacagggactttgacaTTAGGATAACAcaagggactttgaggtgatggaggtaatgttagtaactttaggataacacagagactttgaggtgatggggtaacgttagtaacattaggataacacagggactttgaggtgatggaggtaacgttagtaacgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139963 lncRNA upstream 77713 14544504 ~ 14545929 (+) False G103544
TU139962 lncRNA upstream 78247 14544504 ~ 14545395 (+) True G103544
TU139940 lncRNA upstream 113502 14431912 ~ 14510140 (+) True G103524
TU139950 lncRNA upstream 148020 14475207 ~ 14475622 (+) True G103533
TU139925 lncRNA upstream 235946 14377759 ~ 14387696 (+) True G103517
TU139978 lncRNA downstream 1024 14625158 ~ 14633223 (+) True G103552
TU139976 lncRNA downstream 1642 14625776 ~ 14630761 (+) False G103552
TU139977 lncRNA downstream 1642 14625776 ~ 14628009 (+) False G103552
TU139972 lncRNA downstream 2944 14627078 ~ 14630972 (+) False G103552
TU139980 lncRNA downstream 4130 14628264 ~ 14634284 (+) True G103554
XM_022674758.1 mRNA upstream 62282 14410683 ~ 14561360 (+) False dmd
XM_022674762.1 mRNA upstream 71940 14410683 ~ 14551702 (+) False dmd
XM_022674753.1 mRNA upstream 214246 14388458 ~ 14409396 (+) True knl1
XM_022674754.1 mRNA upstream 214246 14388458 ~ 14409396 (+) False knl1
XM_022674749.1 mRNA upstream 293227 14308926 ~ 14330415 (+) True LOC103031792
XM_022675040.1 mRNA downstream 375321 14999455 ~ 15288847 (+) False LOC103032764
XM_007259064.2 mRNA downstream 1611894 16236028 ~ 16254238 (+) True LOC103039857
XM_007259063.3 mRNA downstream 1696988 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 1748656 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 1763922 16388056 ~ 16418412 (+) True pdcd11
TU139970 other upstream 4560 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 362103 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 687975 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3328827 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 4097482 10525677 ~ 10526160 (+) True G102411
TU139988 other downstream 66909 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 1827041 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 1878042 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 2264262 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 2495713 17119847 ~ 17127310 (+) False LOC103031769

Expression Profile