RNA id: XM_022675040.1


Basic Information

Item Value
RNA id XM_022675040.1
length 6770
RNA type mRNA
GC content 0.41
exon number 28
gene id LOC103032764
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14999455 ~ 15297939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGATGCAATAGTGTCTCAGGTGTCCAGggggtttctgtggtgtttctACATGGATGCTATAGTGTCCCAGGGTGAAGCTCTTGACCTGGATGTGAGGCGAGCATTTGAGTCAGAATCGGGCCTAGATTCAAACCAGAGCGAGGCCAAATCAACTCAGGCCAGAgTGATTCTTATCTTGACCAAGCTTTACGACTTCCACTTGGGCAGTGTCACTGAGAGTTCCCTATGGAGATCCATGGATTACGGCACAACTTACGAGAGGCTCAACGACAAAGTGGGAGTGAAGACGGTCCTGAGTTATCTCTACGTCTGTCCCACCAACAAGAGAAAGaTAATGGTGTTGACCGACCCAGAGTttgagagcagcctactcatcaGCTCGGACGAAGGAGCCAGCTATCAGAAATATCGCCTCAACTTCTACGTCCTGAGCCTCCTCTTTCACCCTTCCCAGGAGGACTGGGCTCTGGCCTACAGTCACGACCAGAAGcTGTACAGTTCCTTTGACTTTGGACGGAAGTGGCAGCTCGTTCACGAGCGAGTGACCCCCAATCGCTTCTACTGgtCAGTGAGTGGTCTGGACCGGGAGGCTGATCTGGTGCACGTGGAGGCACACACTGCAGATGGCCTATGTCAGTACATGACCTGCAGAGCCCAGGCTTGTTCAGAATCCAACAGAGTCTTTCCCTTCCCCGGCTACATCGAAACCAACTCGCTGGTGGTGCAGGACGACTACATTGTCATTCAGGTTACCATGGCAGGCCGGGCGTCTTATTACGTGTCCTACCTGAGAGAACCTTTTGTGCGCATCAAGATACCCAAGTACTCCCTGCCCAAAGACATGCACATCCTCAGCACGGATCAGGGTCAGGTGTTTGCAGCAGTGCAGGAGTGGAACCAGAATGACACTTACAACCTGTACATCTCCGACCCGCGTGGGCTCTACTTTACCTTGGccctggaaaacattaaaactacccGAGGCCTGGGGGGCAACAACATGATCGACTTGTATGAGGTAGCAGGAATTAAAGGCATGCTAATTGCTAACAGGAAGGTGGAGAACCAGGTCAAGACCTACATCACCTACAACAAGGGTCGTGACTGGAGGCTGCTGCAGGCGCCCTCTACTGACCTGGAGGGCAACCCGATCTACTGTGTGCTGCCATTTTGCTCGCTGCACCTACAACTGCAGATGTCAGAAAACCCCTacctgtcgggcagcattaccACCAAGAGCTCGGTGCCGGGAGTCATCGTCGCTACAGGAAACATTGGATCAGAACTGTCCTACAATAACGTGGGCATGTTCATTTCATCAGATGCTGGCAACACCTGGAGACAGATATTTGACGAGGAGCACAACGTTTGGTTCCTGGATAAAGGGGGAGCTCTGCTTGCAGTCAAACAGCCCACAGTCCCCACCAGGCATCTCTGGATCAGCTTTGATGAAGGACAGCAGTGGACGCGACACAGCTTCTCGGCGATGCCGCTGTTCGTGGATGGAGTTCTAGTGGAGCCAGGCATGGACAATCAGATCTTGACGTTTTTCGGACACTTCAGCGATCGGTCGGAGTGGCAGCTGATCAAAATCGACTACAAGTCCATGTTTACCAAACGCTGCACTGAAGGCGACTTCCAGACGTGGCATCTGCATAATCAGgGCGAGCCGTGCGTGATGGGCCAGAAGCAGCTGTACATGAAGCGCCGGCCGGGTGTGTACTGCATGCTGGGAAAGGAGTCGTCCAGGATCCTGTCAGTCGAGCCCTGTATATGCAGAGCTCACGACTTCGAGTGtgaTTACGGCTTTGAGAGGAGAGGAGATGGGAACTGCATGCCAGCGTTCTGGTTTAATCCTGCTACGGTGTCACGAAGCTGCAGCCAAGGCCAGAACTACCTCAACAGCACAGgCTACCGCAAAGTGGCAGCAAATAACTGCACCAAAGGGGTGAAGGAGATGTACACGGCCCGGAAACAACAGTGTCCCAACCGGCCTCCGCGAGGCCTACAACTGGCAACCCGAGACAACAAGCTGACAGCCAACCTGGGCAGCAACGTCACCTTTGTAGTGCAGCTGGAGGAGGGGGACTCGCTGAGGACAAATATCCAGTTGGACTTCGGGGACGGGACGGCTGTGTCCTATTCCAATCTCAGCTGGACAGAGGAGGGGATCAGACATGTGTACCGGAGCGCTGGGATCTTCAGGGTCACCGCCCTCGCTGAGAACACCCTGGGCTATGACAGCACGTCCCTGTACCTGCACGTCACCTgtcCCGTGGAGCATGTTCAGTTACTGGCTCCGTTCGTGGTCATTAAGAACAAGGAGGTGAACTTGACTGCGATGGTGTGGCCCTCTCACTCCAGAACTGTCACCTATTTCTGGTGGCTGGGGAACAGCACTGAGccgGTGATAACACTAGAAGGCAGTATCTCCCACGTGTTCACAGCAGAGGGAATGAATACGGTCACAGTGCAAGTTTCTTCTGCCAACTCTTTACTTCAAGACACCAAGACCATCGCTGTGCAAGAATTCTTCAAGTCGCTGCTTTTATCTTTCTCTCCGAAATCTGACGAGGCCAACCCTGACATTCCGGAGTGGAGGCAGGATGTAGGCAGGGTAATTAAGAAGGCTCTGCTCCAAATTGCTGATATCCCCGCTGATCAACTCCTGGTAGCGGTGTTCCCTGGAATTCCCACAGCTGCAGAGCTCTTTATCCTGCCCAACAAGAACCAGAGCGACGCCAGGAAAAGAAACGAGGAGGACCTGGAGCAGatCTCAGAAATCCTGGTCAGCGCACTGAACCAGAACTTGGTGGAGTTTGAGCTGAAACCAGGATCCAGAGTCATCGTTTACATCACGCAGTTAACCTTAGctccgTTGGTGGACTCCATCCCCAGACACAGCAGTTCTGCCATGCTGATGCTCCTCTCTGTGGTGTTCCTGGGTTTAGCAGTCTTTCTCATCTACAAATTCAAGAGAAAAATCCCCTGGATTAATATATACGCCGAGGTGAACCATGAGAAAGAGCAGGAAATGATTGGCACTGTGGGTCAGAACGATGCCACGACGTCCAAAATCACTCTCAGCGAGTTCTCCAGCCCCAAAGAGCTGATGGAGAAGGAGCTGGAAGTCCGTGTTAAACGAGGAATGATCAACACCTGCGAAAGCACAAGAGAGATCCCCAACTGTACAAGCGTCTGAACGCCAAGAAGAACCAAGAGGACTTGGAACGAGACAAGCCTGGAAGTGCAATGTAAACGTAAAAGTGTACAGAAGTGTCGCCATTTTGAAAGTcctgtatgttttttgtttagttttttttcccttttctttcggtttcctttttttgtaatttcagaaACAGTCATTGTTAATAGTTTTCTAAGGACCTCGTTTATACAGATTTGCATGGGTGTCTTGTTTGATAAGATCTACGCGGAGGATCTAAACACACTTAATGAGACATTTTTAATTATGATGAAAAACGGCCTCGGCAGCGAGAGAAAATGAGGCGCCGACTCAAATCGAGTGGCAAACCCGAAAAACATCGGGCCTTTTTTTCCGCAAAACTTCTCCATGAATATTGTAAGACTAAGTAACTCCAGAATGTGTTGATGGCAAAGTGTCCGCTCCGGATGACTTCCGCTGGATTGACGAGGCGTACTGCGGCGCTCCGGAACGTACGTGCCGCAGATACAATGGGAACGTCGCAGCTTTTCTTATCGTTTCCGCCGCGAAAACGTAATGGTACTTTTGTTTTGAACATCAATCATAGCTTTACGCTGAAAAACCACATTCAGATTCACAAAAAAACGAAAAGACAAACCGCACATTTATAGTTCTTTCAAGGGCATTGCGTCATCACCGTCATCAGCTGTCTGAATCAGGAACACTTTCACCTGCTTCATCTTAAacgcttttatttctttatttattattactttgttttttttctccccctttTTAAACGTGCATAGGGTcagcagcttatttgcatatcAATTAAAATCTAAGCCACTCAAGTCAATAAAGTCAAGtaaattatgcaaataaacagacaccggtatgaataattattttgttttttgtttttttttccaaaggtGAGAGAAAGTTCAGACAAAGGGTCTCCTAGCACATGGCAAGGTTTTTACATTGCAATCAGATTTTAACAGTATTAACATTTGCTCGATTTGAATTTTACATCTGATTGCACAGATGAAGCAGTAACTCAAAAAACAAAAGGATGATGAATTACAATAAGTAGTTGAATttgttttctaaaataaaataaaaaaatatctttataaaaatatatttctcatttCAAGAATAAGATACTTAACTTATTTCCGATTTACTTGCTTTAAGTGTCAGAAGTTtataaatttaaatgaacaatgcaggtatatacataaatatatatattttttaaatgtgtaaagcacataatttcataaaattacagtaattatgcACATCATTTAGCTAATTTCCACAAAAAAAGGGGTACAAATTTGCTCATTTCAAGAAATCTTCCAAACAGTTTGAGCTGTGAATTTTAAGAAATAACAACaatatgtgttttaattagGCTAATAGTTTAGAACATTTTAAGGAGAATCAATGCATACAATTTTGTgaattcatacaaaaaaaaagaattttcaaAATGATGTACACAACAGAAACCAGAAATAAGAAACAACTTCTTATTAAGTTCAAGAATTAATGAAGATACTGTTGCTAAATTCAAGAAATGATTCAATAGAATAGTTTGACGATAATTTAAAGAAAGAACAGGGAGAATTTGTTCTAATTTATGAAtggtaaacatttttttctcattcctAAAGATTATGAATACAATTGTGAATCTTAGGTAATAACAGAGAAATACACATTTCaagaaatataattttgtaaatttaaaaaaggctaaatTAAGAACATTATGAACATAACAGAAACcagaaatgagaaataatgCATACACTTTTTCTAACTTCAACAAATAGTTCTGATACTTTTGCTAAATTCAAAAGAATTATTTAGACAGTTAAAAACAGATCATTTAATGAAatcaaaatcaatcaatcaatttttcaaatgttttttttttatcataatacatgtttataaGGTATGTTACGCAATGAAGCTGCTTGAATTTGACTGTGACGATAAATGCTATTCTCTATTCAGTGCATTTTATTACACTTGATTCTGACAATTGCTGCCAAATTCAAGTTCCTGattaaagtgatttaaaatgttttaaagtggcTTTAAGGCAGAACCAAGACACTAGTGGACAGATTCTGTAATACATACAATTTTGTGAATAGAAAAAAAGGCTAAATTAACATTATGAACATAACAGAAACcagaaatgagaaataatgCAGATACTCTTGCTAAATTCAAGAAATTATGTAGAtcgtaaaaaaaactgataatttaaataaataatgttctaaaacaatttttttctatttttttatttatcattatacaTATTCATAAGGTATGTTAAGCAATGGAGCTGCCTGAATTTGACTGTGACGATAAATGCTATTTCCCTATTCAGTGTAATTTTATTACACTCGAGTCTGAAAATTGCTGCCAAAATCAAGTTCCtgatttaaaatggtttaaagtgGTTTAAAGTGGCTTTAAGACAGAATCAAGACACTAGTGGATAgactttgataaaaaaaaaaaagaactttaacttttttttttttttcagcaggcgTCTGCATAATTTCCAATGTTACCTCATGTTGTTGGGTAGACTAGTCGCACtagtagcattttttttttttttagatatttttattttattattattatttattttttatttttttgcttgtgcCATAATATGATAAAAGTGAACGCCTTACGATAAACAATGCCTTTTTGTCACTATACATATTGCATACCTTTTTGCCATCAAAACATCTGGCCACTTGAAATTCTAGCTTAATTTATACATGTTACAAAGTTACAGTTAATGTATAAACCAGTATGATACAAGTTAGAGTATTTATATGATCAATTTTAATGAGGTaaattgtttgttgtttttttttgtttaattttatttatttttttttttcttaaagagaAACTCTATACTTTATCGTGTCTTGTCTCCCAGGGAAGAGCTTTGAACTGTATCATAGTCTCAGTAGGTCGGGTTCATTTCTCTGTATATACAGCTGTGATGCTGTCATTTTCACATGGCTTCTATTGTAAATACAGTGGCAAAGGCAGAACTGTGAACCATTACACAGTTCTACACCTTTTCAACGGATAAATGCGTGTCGAGAATCTGAGACATTTACTTTTTACGGAAAtcatggggaaaaaaagaataatatgagtttttttttttcttttttttcatttcgaCAAGGTCCTTGACTTGTGCATGTTATTTCCAAGGACGCCAATTTACAGTATGTGTTGTAGATAAGCGAGTGCtgtaaatagttattttttagtCATCCATTAcagaacgaaaaaaaaaaaatggaaattaatattaatattaattacgCTTACCTGTGTTGCCATCTGGATTTTTTTAGTTCAGTCTTGCTGTCGGAACTTCACTTAGCCGGTTGCTCAAGTTTTAAAGGAataatgcatcttttttttttttcttccataatatagttttttttatcagccaCACAAGTAgcataaagtaccagtcaaaagtagtTTTTCAATATTTGAAGCTGAAAAGTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140303 lncRNA upstream 4483 14994742 ~ 14994972 (+) True G103833
TU140260 lncRNA upstream 110143 14889113 ~ 14889312 (+) True G103792
TU140247 lncRNA upstream 131284 14867946 ~ 14868171 (+) True G103779
TU140215 lncRNA upstream 191135 14807457 ~ 14808320 (+) True G103748
TU140214 lncRNA upstream 192483 14806484 ~ 14806972 (+) True G103747
TU140341 lncRNA downstream 92434 15381281 ~ 15381522 (+) True G103866
TU140353 lncRNA downstream 212359 15501206 ~ 15504686 (+) True G103873
TU140355 lncRNA downstream 282449 15571296 ~ 15577996 (+) True G103874
TU140357 lncRNA downstream 290306 15579153 ~ 15580096 (+) True G103875
TU140420 lncRNA downstream 571664 15860511 ~ 15860722 (+) True G103929
XM_022674755.1 mRNA upstream 334696 14410683 ~ 14664759 (+) True dmd
XM_022674756.1 mRNA upstream 334696 14410683 ~ 14664759 (+) False dmd
XM_022674757.1 mRNA upstream 334696 14410683 ~ 14664759 (+) False dmd
XM_022674761.1 mRNA upstream 334696 14415665 ~ 14664759 (+) False dmd
XM_022674759.1 mRNA upstream 334696 14415707 ~ 14664759 (+) False dmd
XM_007259064.2 mRNA downstream 947181 16236028 ~ 16254238 (+) True LOC103039857
XM_007259063.3 mRNA downstream 1032275 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 1083943 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 1099209 16388056 ~ 16418412 (+) True pdcd11
XM_015608314.2 mRNA downstream 1154111 16442958 ~ 16448489 (+) True LOC103038100
TU139988 other upstream 307256 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 380373 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 737916 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 1063788 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3704640 11287869 ~ 11294815 (+) False map2k7
TU140510 other downstream 1162328 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 1213329 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 1599549 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 1831000 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 3630213 18919060 ~ 18923203 (+) True G104656

Expression Profile