RNA id: TU140473


Basic Information

Item Value
RNA id TU140473
length 214
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G103972
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16258785 ~ 16258998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGGAAACAGAAGTTCGGGGACGATTTGAatgcctttttttgtttgtgatgCTTGAACTCCCTTTGCCCTGTCAGGAATCGTATGCTTCTATGAACCATATAGAATGCTTTTTTATTGGGAtgtcacagtaaaaaaaaatctgcagtgAACCACCCTGGCACTCACCTTACCcaccaacccccaccagagcccacCCACAAAACGAGTTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140440 lncRNA upstream 172941 16085643 ~ 16085844 (+) True G103945
TU140437 lncRNA upstream 178625 16079730 ~ 16080160 (+) True G103943
TU140432 lncRNA upstream 207383 15993117 ~ 16051402 (+) True G103940
TU140420 lncRNA upstream 398063 15860511 ~ 15860722 (+) True G103929
TU140357 lncRNA upstream 678689 15579153 ~ 15580096 (+) True G103875
XR_002650593.1 lncRNA downstream 174811 16433809 ~ 16437632 (+) True LOC111193544
TU140512 lncRNA downstream 285258 16544256 ~ 16546010 (+) True G104001
TU140537 lncRNA downstream 296696 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA downstream 296696 16555694 ~ 16559981 (+) False LOC103037450
TU140633 lncRNA downstream 423742 16682740 ~ 16687373 (+) True G104082
XM_007259064.2 mRNA upstream 4547 16236028 ~ 16254238 (+) True LOC103039857
XM_022675040.1 mRNA upstream 969938 14999455 ~ 15288847 (+) False LOC103032764
XM_022674759.1 mRNA upstream 1594026 14415707 ~ 14664759 (+) False dmd
XM_007259063.3 mRNA downstream 62124 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 113792 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 129058 16388056 ~ 16418412 (+) True pdcd11
XM_015608314.2 mRNA downstream 183960 16442958 ~ 16448489 (+) True LOC103038100
XM_022674774.1 mRNA downstream 204940 16463938 ~ 16507787 (+) False col17a1
TU139988 other upstream 1566586 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 1639703 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 1997246 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 2323118 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 4963970 11287869 ~ 11294815 (+) False map2k7
TU140510 other downstream 192177 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 243178 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 629398 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 860849 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 2660062 18919060 ~ 18923203 (+) True G104656

Expression Profile