RNA id: TU140512


Basic Information

Item Value
RNA id TU140512
length 355
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G104001
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16544256 ~ 16546010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgttttttagcggcgtcagttcactgcagccctgaacatagccgggctacgtcagtgcgtgatgacgcaatcatacaggcacgtagccagctaggctaggctaggctaaaccTGGGTCGCCTTCTCTCCGCaccgcacctaaaatctcccgcgatgaagcgaaaccgaccctaaccgagcggatctccgctccgcacctaaaacccgcccgccttgaagcgaaaccgaccctaaccgagcggatctccgctccgctccgcacctaaaatccgcccgcgatgaaacgaaaccgaccctaaccgaacggatctcggctgcgctccgctccgcacctaaaacccgcccgcgatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650593.1 lncRNA upstream 106624 16433809 ~ 16437632 (+) True LOC111193544
TU140473 lncRNA upstream 285258 16258785 ~ 16258998 (+) True G103972
TU140440 lncRNA upstream 458412 16085643 ~ 16085844 (+) True G103945
TU140437 lncRNA upstream 464096 16079730 ~ 16080160 (+) True G103943
TU140432 lncRNA upstream 492854 15993117 ~ 16051402 (+) True G103940
TU140537 lncRNA downstream 9684 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA downstream 9684 16555694 ~ 16559981 (+) False LOC103037450
TU140633 lncRNA downstream 136730 16682740 ~ 16687373 (+) True G104082
TU140707 lncRNA downstream 314978 16860988 ~ 16861202 (+) True G104144
TU140723 lncRNA downstream 381214 16927224 ~ 16934483 (+) True G104151
XM_022674774.1 mRNA upstream 36469 16463938 ~ 16507787 (+) False col17a1
XM_022674771.1 mRNA upstream 36469 16472728 ~ 16507787 (+) True col17a1
XM_022674778.1 mRNA upstream 36469 16472728 ~ 16507787 (+) False col17a1
XM_022674777.1 mRNA upstream 36469 16472728 ~ 16507787 (+) False col17a1
XM_022674773.1 mRNA upstream 36469 16472728 ~ 16507787 (+) False col17a1
XM_022674781.1 mRNA downstream 9738 16555748 ~ 16574433 (+) True LOC103037450
XM_022675042.1 mRNA downstream 30833 16576843 ~ 16601035 (+) True LOC103037127
XM_007259054.3 mRNA downstream 65591 16611601 ~ 16625584 (+) False LOC103036820
XM_015608317.2 mRNA downstream 65592 16611602 ~ 16625584 (+) True LOC103036820
XM_022674782.1 mRNA downstream 82679 16628689 ~ 16662345 (+) True LOC111188171
TU140514 other upstream 36479 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 86047 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 1852057 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 1925174 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 2282717 14260625 ~ 14261539 (+) True G103490
TU140710 other downstream 342386 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 573837 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 2373050 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 4443263 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 4473028 21019038 ~ 21028990 (+) True G105312

Expression Profile