RNA id: TU140514


Basic Information

Item Value
RNA id TU140514
length 3219
RNA type TUCP
GC content 0.39
exon number 6
gene id col17a1
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16463938 ~ 16507787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCAGGGTATCCTTAGACAGTCTGGACCCCCAGGCCCACCCGGCCCTCCTGGACTTCCCGGACCAACTTACAGtgatctctctcttcttctgcaAAACTCAGAGTACAGAGGTCTTCTGGGACCTGCAGGGCCCCCAGGTCCTCCAGGCCCTGCTGGCTTCCCAGGACCTCCTGGACCCCCAGGCCCAGTTCCTTATACTGGCACTTTCAGTTTGGAAGAAATCCAAAGATACATGGAAAATGCTGGCTTTAAAGGACCACCTGGACCTCCTGGACCCCCAGGGCCACAAGGACCTCCTGGCATTGCGAGAGGGCTGGTGTCCTATGCTGAAAACGCACAGCAAGACTCTCTCCGAGCTGAACTACAGCAGTATCTGAAGAATGAACCTCTGGACTACCCCAGTATCGCAGCAGAAGTGGTGAACTACCTCAAATCTCATGGTTTGATGTTGAGGGATGTGGCTAATGAAGATGCCCACCGTTCCCAGGAGCCATTCAGACCCTACAGCAACATGACTGAGATCATTAACTTCATTAGAGGTGAGCAGTAACTAACTCACATAATTACATATCAGATTTTGCAAGATCCTTAGTGCGCTTCTGTCTTTTGCTTCATCGTGTGTTGAGTTTAAGCTTCTGTGGACACTCGCGCAAAAAAACCATGGTAACGAGGCCTGCTTTGCTTAGCAAACTGCATTCCCAGGACTAGATCAGTCTGGAGGTGATGAGCTGCTCTGCAGCATCAACAACATGATGTTTTCTTTAACCTCCTAAGACCTGAACTCTTGCAGggcatgcattttttaatttctctttgctatttgggctaattggcacctgattagtgtaaaagcaaaaaaatagcattttaaatgatgtcagttctgagaaaactgtccacatatgaggactttagttttatatttcaataCAACTCAAGGAAGTCACAATTAGTAAAtgttcaaaacatttattttgtgcctgaTCACGGCAGCATGTTTTGTctgagtgcaaaacaaaagtagaaaccATACTTGTGCTCCTTTGAGTAATATGGCTGATTTAaagtgctgctttaacacatAAAGTAGACATAAAGTAAAACACATGTAACCTAAATCAAACACTTTAATCACTTCCCTTAAAGACCACGGCCTTGTTGGACCACCAGGTCGACCCGGCCAGAAAGGAGAGATGGGATATCCTGGTCCCAAAGGACCAAGAGGTATGTGATGATCTGGATACGTTTTTTAtttaacctcctgagacccgAACTCTTGCAACAGTTGTGTTCCTTTGAAGAATATGGCTcatttgaagtgctgcttcaacattaagacatttactgtatttactgttcatttaaatttctaTACAAAATCAAATCTTTAAcgtgttaaactcttctgccaccTCTAGGTGtcagtataatggcctcataagaggacaccaggcccttgttAAGCAAAATTAatgttgtggtctagacaacccaaaatgtgatgtccacatcTGTGGACGCCAGGAATTAGGAGGATATACAtaattaactatttaattaAGTCATAAAATTCCAGATTGACTATTACTATGATTTATAGTAATGTAATTGAATCACTATCTTAGATCAATGCCAAAAGGGATAGCAGTAAGTAAATTAATCATGAGGCATTATCACCcccagtggacagagcagtgggtgATAATCGGTGGCATCTGTCTAaaactgtccatgcaaacagacagaaAGTGGCTCTGGCAAAAATCATATCCATATATCCtcagacatggcaaaagtcatgggacacaatatatACTAGTTCCTAACCAATGATCACCATTCCTAAGCTGTTCATGATACATTACTGTATaatttcactgtttattttgttgcactTTCCCGTATCTCATCCTCATTGGTCACATTTAGGTCCTAGAGGAGAGCGAGGCCTCCCTGGTCTACCAGGCTTTCCCGGCAATGATGGACCTCAAGGACCAAAAGGAGAAAGAGGAGATGCTGCCTACATGAGCctcaaaagaaagagaagaagccGGGGGTTTAAGAGTAATTAATTCATATGGATACAGAAGAAGAGAGGAACTCATGGTGCAGCTGGcaataaaaaccttttttaatgttttataaaaatcCCAAGAATGATCTGTAAACATATGATctgtaaactgtgtttttatgaaaagttATTGTACAATCTTTTAAATgtgaacaaaaataattaatctgAGGTTAAATTGTCTTTCTTTAAACACGTTGAACACAGCCTGACACAGAGATATTcaacttacagctctggaaaaaaaataagagaccacttcagtttctgaatcagtttatctgattttgctattttataggtttatgtttgagtaaaatgaacattgttgttttattctctaaactacatacaacatttctctcaaaatgtatttgcataaaatgagaaatggctgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaaaaaataaaaaacaagttcaaaaaagtatatttggtggaacaaccctggtttttaatcacagttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaattcaagcagttcagcttcctcttaattatattctaggggtttccaatttggtaaaatcaataaaactcatcaatttaagtggtctcctttATTTCTAGAACTGTATATTCAAAAAGGTAAAAGTTGgtaattgagtaaaaaaattaaaataattaggtATCATGTTAGCAgtgcatgttaaaaaaaagaataacaataaGGGGTAATGTGCTCTAGCTGGTCTGTTTTGTAATTCAGTGTTAAGATGAATTTAGTTTTCAAGATGTTGTTTCTGAGGTACgaggtttattgtactgttCATGCATGGTTAcggtatgttttattatgtgTGGTGAAATTAACTGTGTATTGTATCttgtttattctgtattttgtactttttgtaatcagtgtatttttaaatcaatcaatcgTGATCATGctaacaaggtttttttttctttttacgcTCTTtgaaaactttaattttaaaaacacttatatGCAATTTAGCACTGTTTAGGTCAGTTTTGTCAATGCGAAATGCCTTTCTGTATGTCATGGAAAATTAAAGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650593.1 lncRNA upstream 64544 16433809 ~ 16437632 (+) True LOC111193544
TU140473 lncRNA upstream 243178 16258785 ~ 16258998 (+) True G103972
TU140440 lncRNA upstream 416332 16085643 ~ 16085844 (+) True G103945
TU140437 lncRNA upstream 422016 16079730 ~ 16080160 (+) True G103943
TU140432 lncRNA upstream 450774 15993117 ~ 16051402 (+) True G103940
TU140512 lncRNA downstream 36479 16544256 ~ 16546010 (+) True G104001
TU140537 lncRNA downstream 47917 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA downstream 47917 16555694 ~ 16559981 (+) False LOC103037450
TU140633 lncRNA downstream 174963 16682740 ~ 16687373 (+) True G104082
TU140707 lncRNA downstream 353211 16860988 ~ 16861202 (+) True G104144
XM_015608314.2 mRNA upstream 53687 16442958 ~ 16448489 (+) True LOC103038100
XM_022674769.1 mRNA upstream 83764 16388056 ~ 16418412 (+) True pdcd11
XM_007259060.3 mRNA upstream 118678 16372790 ~ 16383498 (+) True taf5
XM_007259063.3 mRNA upstream 177061 16321122 ~ 16325115 (+) True LOC103039552
XM_007259064.2 mRNA upstream 247938 16236028 ~ 16254238 (+) True LOC103039857
XM_022674781.1 mRNA downstream 47971 16555748 ~ 16574433 (+) True LOC103037450
XM_022675042.1 mRNA downstream 69066 16576843 ~ 16601035 (+) True LOC103037127
XM_007259054.3 mRNA downstream 103824 16611601 ~ 16625584 (+) False LOC103036820
XM_015608317.2 mRNA downstream 103825 16611602 ~ 16625584 (+) True LOC103036820
XM_022674782.1 mRNA downstream 120912 16628689 ~ 16662345 (+) True LOC111188171
TU140510 other upstream 43967 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 1809977 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 1883094 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 2240637 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 2566509 13929065 ~ 13935667 (+) True G103376
TU140710 other downstream 380619 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 612070 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 2411283 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 4481496 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 4511261 21019038 ~ 21028990 (+) True G105312

Expression Profile