RNA id: XM_022674790.1


Basic Information

Item Value
RNA id XM_022674790.1
length 4693
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC103031769
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17119847 ~ 17138973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGCTCGCTCGTCATTTCCTTTTCGCCCCGGTCTCTCACTCCGTGCAGATCTAGGATGCAGAGCTGCAGTTTTAGATCACTTTAATCTCTAACctttcctcctccacctcctcctctcctcctcctccccggCAGAAGTCCGTCTCTCTGTCCGCACAGCGCGCTCTCTTTCTCCGCCTGAGCTCCTCCAGCACCGCCGCCGCCGCGCTGCAGCCATGCCCAACATCGTGCTCTTCAGCGGGAGCTCTCACCACGACCTGTCCCAGAAGGTGGCGGACCGCCTCGGACTGGATCTGGGGAAAGTCATCACTAAGAAGTTCAGTAATCAGGAGACCTGTGTGGAGATAGGTGAGAGTGTACGAGGGGAGGATGTGTACATCGTGCAGAGCGGCTGTGGAGAGATTAATGACAACCTGATGGAGCTGCTGATTATGATCAACGCCTGCAAGATCGCCTCCTCATCACGCGTCACTGCCGTCATTCCCTGCTTTCCCTACGCCCGACAGGACAAGAAGGACAAGGTCAGAAACCTGTTAAAACCCCTAAACCAGCAAAGACCAGTTATAGCATATGTGCTATATAATTGCTGTAGTCTAATTTTGAGTtgtgtataaatattaattatgcaTTTTGTGTCCCTCCTACAACAGGGCTTTTTTGACATCGCTGTGGACAATCTTTACGCAGAACCAGCTGTTCTACAGTGGATCCGAGAGAACATTCCAGAGTGGAAAAACTGCATTATTGTGTCACCCGACGCTGGCGGTGCTAAAAgGGTGACGTCCATTGCTGACCGCCTAAATGTTGAGTTTGCCCTCATCCATAAAGAGCGTAAGAAGGCCAATGAGGTCGACCGTATGGTCCTGGTGGGAGACGTGAAGGACCGTGTGGCCATCCTCGTGGATGACATGGCAGATACATGTGGAACCATTTGCCATGCTGCTGATAAGCTCATCTCTGCTGGTGCAATAAAGGTCTATGCCATCCTCACTCACGGCATCTTCTCTGGACCTGCCATCTCGCGCATCAACAACGCCCCCTTTGAAGCCGTGGTGGTCACCAACACCATTCCACAAGAGGAGAAGATGAAGCAGTGTCCCAAAATTCAGGTCATCGACATTTCAATGATTTTGGCAGAGGCCATTCGAAGAACCCACAATGGTGAATCAGTCTCGTACCTCTTCAGCCACGTCCCTCTGTAAAGACCGCTTGAGAAGATCAGGGGTTGGACCTACTTTCTCCACCATCAGCCATTCCAGTATCATTCCTGTGTGGGAGCCTAAAGAGTGAATTCCATTTAGCATCCAATAGCAAGTGACTGGCTCGTACTGAATCCCACCAGCATTACTAAACTTTTCCTCCATCATTCCCTCACAGCAAACTActgcagcatttttatttatcatttatgatgcttttttgattaattgttttatttcatccCTGAttcattacaatgttttttttgtattactgGCCTGGATCTGGCTTTTGCCTTAACCAAAGATCTTGATGCCAATTGCCTGTTTAATATCCATTTTGTAccttagttgttttttttttttttttcttcaattgaACATAAAATGAAAAGTAAGCTGcaggatctgaaaaaaaaatctactgacctcttttttcttcttcagttgacttattattctctttatttcatttagatTATTTAGAGCAGTTGTGCAGTTCTACTAAAGATATAGATCTTTTCAGCAAATGTTCTGATGTTTTCAGCCGTTTAGTGTTAACTGATTTTGGATTTGGTTTCTAAATGGAAGAAGAAATTATCTCAGAGATGACTATACTGTAATTGTTACAACATAGTTCTCATTATATCTTAAACAACTTGACAGTATTCATGTTCTCATGTATTCAAACGGTTAATTCTTACACTCAGTTTGAGTTTAAACATGTCAAAAGTGtaagaatttaatttttttgctttgttagctacattacatTTGTAGCTCCAGTACAAAAACAGCTTAAACTTAAGTCTTAATTGAGCCAGCCAATCATTAAAAGTTATGGGCCACGTGTAAGAAACAAGGAGTAATGGGTCTTCATTCAAACTTGGCTGCTtgatttgtcttttatttttaccacTTCCTTAATGCATACCTCAATGTTTTATCCAAGTATACATTTGGGACATTTTTGTAGCTGCCGTTTATTTCAAAAAGTAgaatttcttgtttatttaagaTAATGTAGGTCAAAAAGTGTGTACTGTCCAGTAGATACAGGTGTAGGTTCCTGTTCCCTTCTCTTATTGGACGAGCTAGACACTGGGCTTAAGTTATCTATCTTATCTAACTCTAGAAGAAATTCTGCACTGGCCTGGCTAAGCTATTtagtagggatgcaccgataTGAAAATTTTcggctgaaaaaaatgtaagtttgaGACAAATATCAACACTGGACGTTTTTTTACGGAGATTTTCGTAAATTATAAAACTATTTTCACCAATGCATACATTTAATGTAGGCTCCAATTTacttttgtcttgcttttcaaagtaaaaaaaagctattacaaaagtacagtttaaacaaatgaacaacgCACAATATGACTATTATTATAAACgcacaatataaataaatgtcattgttcaaaataaattattggatattttcacttttttgacCGAACAACAGATGGCATTTTTCCCCCAGATTGCCAGTTTCTGCCAAATCATTCGATGCATCCCTATTATTTATAAGCAACAAAATATGAGTAACGGCACATTCATACTAAAACAAATATGCTTCAAGTCCAGTCATTCAGTTTAAGATATTGCTCatcaaatgtgtatttttaattaaaaacccCTATTTGTTGATCTTTATAAAAAATGCAAAGGAAAAAAGACTATCACAATGGCTAAAAGACTGTTTTCAGATAAAGTATATGAACATGCTGCTGTGACCTATTGAAGTTGGACTTTGTATTGATTCTTGATTCTGTTCTCATAATTTCATGGCATTCATATTGCCACTTTACAAACATTCTTTAAACAGTTTTTGCCTTTAAATAGGCATTCCATAAACAGTTGTACCACTAATGTTACAGTACTTAGGACAATGTAGAATCGAAACATTACAGTTACTGTGTTGGAATGTTCAGCTATTTTGTGTTGTGGCCGCACACTAATGTTTTGTCTCAGTCTATAAGGATATACCTGTTGATCAGCGCTTTGTCTAAGATTCATACATAGCTCTTTGCCTTTAAGTTGAGTCAAAAACAGTTCAAGTGGCTGAACTGTTGAACTGATTGCAGATTCATTATGGAAACTTTACACAATATCCGTCACAAGCACTGACATCGGATGCATTGATGGTGGAATTCTGGGCCAGTTCCAGCCTATGTCATTTTTCATGTCTGTTTTTACTGCAGAGGTGTGCACTGTCATGAAACTGATGGGTGAACCTGATCTTTTTAATGGTCAGTCATATTTCTGTTGTTATCACAAAGAGTTTTCACGATAAACACATTGGGGAAACATTGTAAAAATGCCTTGAATAACCGAAAACTTCAGTTGCATTACCTGTGTGCAGCAAAAGAGGGTGAGCGTGATGCTGCAGGCTTAGACATAACTAGAATGGAGGCAGGGGTAGAGGTAGAGCTTTATAGTGAACCAGTGGACCTAATTACTACTTAGCCGAGGAAAAATTAGTGCAACCAAGCCAAGTGCTGAAAAACGTTCAAGgagctttaatttagaatttaaaTTTATCATGTCACATTGCATAAATTTTAGGGATAGTATTTTTATactagtaaatataaaactgaactctatccgtACTTGAGAGTAAATCTACTGCGTAAAAAGTACTATGATAAAATCCCAATGTTTGTCAGTATTTTGGTTGGACCAGGTCAAGAGAACCAGAGAGAAATGTAAATCCAAAAATGTTACTGGTTGAACGTAGTGCCTTAAAAGATccccaagattttttttttttttttttttaataaaaggaaaaagCAGAGTTGGAAGGGaacaaaatattcaaaataatgGCATGAACATTCTGGCACAACCATCTCTGCAAcatctaataaaatatattctaaaaacACAGTGGTCTGGTAGGGTAGTTGGAGTGTAATTGATCTCTACATTTTGAGGGTATTTACTAAATGAACAAAACTATATACTTTAAAAGTATGCTGGGTGTCCGAGGTCTACAAATCCCAGAAACTCACAGCCTGTCGCTTTTAAAGAACCAATTACAGGACCCAGTGCTTCACCATCAATGCTTACCTGTGACCTCCAACCATTGAAAGCGACTATCCCTTTAATCTCCACTGCTCACAGAATGTACTAGAAACTATTCCCTCTtatcttatttaaaataaataaggcctCCCAGGAGCAAATTAGACCTATTACAGTAAAATTGACCCTAGATCAGCACGAAAGAGCAATGCGAAGGACAGAATGAAGCTCTGGCTCAGGGATGTCTGAAGATTGCGGCTTTGCCTGGgttgttttttaaagttttgacgAAGGCTCCTAATTTCTTAGATGTGAGAATGGCTTTAGAAAGAGCAGCCATCACATTATTAGTGGGATGCAGTGACCAAGTGCTTCCAGCTTCACAACTCTGATGATGCCCTGTCTGTTTCAAAATGACAACCGAATTAAAAGTAATGCTTTGACCATG

Function

GO:

id name namespace
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140739 lncRNA upstream 72125 17046772 ~ 17047740 (+) True G104162
TU140723 lncRNA upstream 185382 16927224 ~ 16934483 (+) True G104151
TU140707 lncRNA upstream 258663 16860988 ~ 16861202 (+) True G104144
TU140633 lncRNA upstream 432492 16682740 ~ 16687373 (+) True G104082
TU140538 lncRNA upstream 559884 16555694 ~ 16559981 (+) False LOC103037450
TU140772 lncRNA downstream 43323 17182296 ~ 17182538 (+) True G104177
TU140779 lncRNA downstream 215456 17354429 ~ 17356491 (+) True G104183
TU140782 lncRNA downstream 274429 17413402 ~ 17417938 (+) False LOC111193547
TU140788 lncRNA downstream 343151 17482124 ~ 17485186 (+) True G104190
TU140795 lncRNA downstream 458175 17597148 ~ 17597444 (+) True G104196
XM_007259037.3 mRNA upstream 2644 17113310 ~ 17117221 (+) True LOC103032094
XM_022674789.1 mRNA upstream 10305 17081201 ~ 17109560 (+) True LOC103032412
XM_007259043.3 mRNA upstream 42952 17065402 ~ 17076913 (+) False timmdc1
XM_022674788.1 mRNA upstream 42952 17065419 ~ 17076913 (+) False timmdc1
XM_007259042.3 mRNA upstream 42952 17067191 ~ 17076913 (+) True timmdc1
XM_007259035.3 mRNA downstream 3560 17142533 ~ 17149608 (+) True chst10
XM_007259034.3 mRNA downstream 44040 17183013 ~ 17199615 (+) True lonrf2
XM_022674795.1 mRNA downstream 74861 17213834 ~ 17317203 (+) False map4k4
XM_022674792.1 mRNA downstream 74862 17213835 ~ 17317203 (+) True map4k4
XM_022674794.1 mRNA downstream 74862 17213835 ~ 17317203 (+) False map4k4
TU140710 other upstream 226142 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 612088 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 661656 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2427666 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 2500783 14618635 ~ 14619082 (+) True G103551
TU141369 other downstream 1780087 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3850300 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3880065 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 4188219 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 5671106 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile