RNA id: TU140803


Basic Information

Item Value
RNA id TU140803
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G104204
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17701687 ~ 17701919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagtgcgcatttctagcgcagaaaaacggggcaaaagagtctaaaagcggagagagtgctcatttctagtgcagaaaaacgggccaaagagtctaaaaacggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagttgccgtaattaaggagtttaatattaagagacatcatgaaattaaacatcaatttgaaaaatcttagtttacacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140795 lncRNA upstream 104243 17597148 ~ 17597444 (+) True G104196
TU140788 lncRNA upstream 216501 17482124 ~ 17485186 (+) True G104190
TU140782 lncRNA upstream 283749 17413402 ~ 17417938 (+) False LOC111193547
TU140779 lncRNA upstream 345196 17354429 ~ 17356491 (+) True G104183
TU140772 lncRNA upstream 519149 17182296 ~ 17182538 (+) True G104177
TU140993 lncRNA downstream 159716 17861635 ~ 17861860 (+) True G104363
TU141009 lncRNA downstream 194750 17896669 ~ 17901106 (+) True G104374
TU141010 lncRNA downstream 194750 17896669 ~ 17898000 (+) False G104374
TU141011 lncRNA downstream 194750 17896669 ~ 17897899 (+) False G104374
TU141012 lncRNA downstream 194750 17896669 ~ 17965475 (+) False G104374
XM_022674801.1 mRNA upstream 228290 17424943 ~ 17473397 (+) True LOC103032976
XM_022674800.1 mRNA upstream 282549 17406595 ~ 17419138 (+) True LOC111193547
XM_007259033.2 mRNA upstream 376321 17322245 ~ 17325366 (+) True LOC103030825
XM_022674797.1 mRNA upstream 384484 17213835 ~ 17317203 (+) False map4k4
XM_007228697.3 mRNA downstream 190842 17892761 ~ 17896437 (+) True ing1
XM_007228693.3 mRNA downstream 232940 17934859 ~ 17944725 (+) True hsf2bp
XM_007228692.3 mRNA downstream 248102 17950021 ~ 17962718 (+) False LOC103027494
XM_007228691.3 mRNA downstream 249882 17951801 ~ 17962718 (+) True LOC103027494
XM_007228686.3 mRNA downstream 296396 17998315 ~ 18006511 (+) True gemin8
TU140760 other upstream 574377 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 807964 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1193910 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1243478 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3009488 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 1217141 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3287354 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3317119 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3625273 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 5108160 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile