RNA id: TU141016


Basic Information

Item Value
RNA id TU141016
length 1060
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G104378
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17903955 ~ 17905999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaagGAATCAGTCATATCCAAAACACAAATACTTCTGTACAGTCAGAATCCATTTGTACACAAATCCATTCAACTGAGCTTCTTACAAAACATGAAACAAGGAACAGAAGACAAACACAAAAGTTGCATACAAAACTTTCCATAACAATAGTGCCAAgctacatagaaaaaaaaaaaaaaaacaacatatattgGCACCAAGCCTTAGAATTGAACAGAAACAGTAGATGCAAAAGTCAGTCATCAAAATCATCATACAAAGAAAATGCACATTGACCACACCATCACTTAGAACACATCATCCAGGCTAGGCTAGCtcacaaacataaaataaagtattcagAAAAGCctgatacaaaatacaaaatcataGTCCCCTTTGGTACAAGGAACGGGATTCCCTCttaaattgtaaaaacaaaaacaaacaccacTTCTCACTGTGGCCTGTGATAAGGTGCAAGAGCATCGTCAAGGAAAACAACTCGGGTTTAAGGCGGCTGGTGGATTGAACACGCAACCACTTGCGAACAGAAGGACAAACGGACAGACTGATTGATTCCAGCTGGACGGCAGATTCCCTTCATGAGCCGTGAAACATCTGCATGGCACTCAACACCTCTCGATCGTAGTGCTGCTCGACCCTTACGGTTGTATTGTGATCATGGCGGTTGTCGGCATCCTCCAGGTCCTCCGCCGTGTCTCCGAAGCCATGGTAATACCCGTAGTGCAGGTGCTCGCTGGAGTCCGAGGGGAACCTGCCCCAGGACGGCCTGTAGGATACGCAGCTGCTAGGGCTGGCGGTGAGGTGCAGCGAGCCACACATGTCGCTTCTAGTCTCCGCATGATCAGGTTCGGTTCGGGCCGGGTGGCAGAGCCCGTTTGATGAGAAGCTGTTGACATCATTGTTGTTCTGTTGCACATGACCGTTCCTCAGATTTGTGGCTGTGTCTATGCTGCCATctgattggctgtctgAAGCAGGTTCCACAGCCATGCtctccacctcctctgctgaCCCATTTAATGTCTTCAATGGAAAATCCATGCCTGAATGga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141009 lncRNA upstream 2849 17896669 ~ 17901106 (+) True G104374
TU141010 lncRNA upstream 5955 17896669 ~ 17898000 (+) False G104374
TU141011 lncRNA upstream 6056 17896669 ~ 17897899 (+) False G104374
TU140993 lncRNA upstream 42095 17861635 ~ 17861860 (+) True G104363
TU140803 lncRNA upstream 202036 17701687 ~ 17701919 (+) True G104204
TU141021 lncRNA downstream 18951 17924950 ~ 17992449 (+) True G104383
TU141032 lncRNA downstream 64935 17970934 ~ 17992147 (+) True G104392
TU141037 lncRNA downstream 71297 17977296 ~ 17982804 (+) True G104396
TU141105 lncRNA downstream 188044 18094043 ~ 18095156 (+) True G104445
TU141113 lncRNA downstream 264547 18170546 ~ 18170758 (+) True G104448
XM_007228697.3 mRNA upstream 7518 17892761 ~ 17896437 (+) True ing1
XM_022674801.1 mRNA upstream 430558 17424943 ~ 17473397 (+) True LOC103032976
XM_022674800.1 mRNA upstream 484817 17406595 ~ 17419138 (+) True LOC111193547
XM_007259033.2 mRNA upstream 578589 17322245 ~ 17325366 (+) True LOC103030825
XM_022674798.1 mRNA upstream 586752 17213836 ~ 17317203 (+) False map4k4
XM_007228693.3 mRNA downstream 28860 17934859 ~ 17944725 (+) True hsf2bp
XM_007228692.3 mRNA downstream 44022 17950021 ~ 17962718 (+) False LOC103027494
XM_007228691.3 mRNA downstream 45802 17951801 ~ 17962718 (+) True LOC103027494
XM_007228686.3 mRNA downstream 92316 17998315 ~ 18006511 (+) True gemin8
XM_007228687.3 mRNA downstream 92316 17998315 ~ 18006511 (+) False gemin8
TU140760 other upstream 776645 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1010232 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1396178 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1445746 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3211756 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 1013061 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3083274 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3113039 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3421193 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4904080 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile