RNA id: TU141105


Basic Information

Item Value
RNA id TU141105
length 1114
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G104445
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18094043 ~ 18095156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTACAGACTCTCTGGGCCACTGTAGCAGTCATGCAACCTGCCCACAGTCAATGCTAGGCTTATTTATTAGAGGCATACCCAGCGACTATGGTACCACTGCTCCCCGCACTCAGCACAGGTCATGAAGGTCATGGCGTCCTCGTCGTTATTTCCACTCCTCACCCAGGAGGGCAGAAAGAGGGTCCCGCGGGAGACCTGGGTCACCCTGCAGTTCATGCTCtggcagcggcggcagcgcacTTTCGTGGTGGTCGTCCCCTCAGGCTGCTGAGGTAGCTGGTGTTCACTAATAGCTGCTGCAGTGTATCCTTCCCTCAGGCTCCTGAGCTCCTCGCTTGCCATCTCCTCCACAGACATGCGGGCAAAAACCTCTGGGGCTAGGGTTCCTGTCAGAAGACCCTGGCGAAGATGAGGGTTCTTTGGATTCTTCAGGTTGGCCACCCTGCTTCTTACACAGGACTTGTACTTTGCCTGGTTTTGCCTGTGGAGAGCATGAATGTGCTGTTCAATGGCTTGAGCTAGGGTGGAAATCTGTCTTGTGTCTTCTGGGTTTGTGGGTTTCTGGTCTGGGATCAAGGCTTGGATAAGAAGCTCCACACACTTGGTTCTCACAGGTTTGGAGTCTGTGGAACTGGTAGACTGAACCCTAGAATCTTCTCCGTTGTGGTTCTCTGGAACTGAAGCTGTGGACTTGCTATCATCTGCCTTCAGTAAAAGTGCAGTGATTTTAGAAGATGGTAGATCTGAATCAGAACTTGACATCTGTTGGACATCACTGTGCTGAACTGTTGGGCCCAAAACTGTTTCAGTCTCAGCACTTGGAACAGATTGAGCCATTTCAGGTGGTCCATGTTCTTTTATTTGACTTGTGTCTTTGGTACTGCTGTGTCCTTGGGATGAGTTGTACATCCCTTTCCATTTTGAGAGCAGTTCCTTTGCTGTTTTGCGAACACTAGTTTGCACTGGACATGATTTTAATAGCTGATAAACGGTCTTGGCGATGTCAGTGGTCTGCAGCTGCTCTAATGTTACAGGACTGTTGCTCAAGTCTGCAAGCAGAGATGAAACATCTTCATAATTGCAACCTTTTTGTAGTTTTTCTATTTGAATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141021 lncRNA upstream 101594 17924950 ~ 17992449 (+) True G104383
TU141032 lncRNA upstream 101896 17970934 ~ 17992147 (+) True G104392
TU141037 lncRNA upstream 111239 17977296 ~ 17982804 (+) True G104396
TU141012 lncRNA upstream 128568 17896669 ~ 17965475 (+) False G104374
TU141016 lncRNA upstream 188044 17903955 ~ 17905999 (+) True G104378
TU141113 lncRNA downstream 75390 18170546 ~ 18170758 (+) True G104448
TU141106 lncRNA downstream 93554 18188710 ~ 18191210 (+) True G104446
TU141107 lncRNA downstream 93554 18188710 ~ 18191210 (+) False G104446
TU141109 lncRNA downstream 93554 18188710 ~ 18191210 (+) False G104446
TU141111 lncRNA downstream 93554 18188710 ~ 18191210 (+) False G104446
XM_022674810.1 mRNA upstream 11581 18009302 ~ 18082462 (+) False LOC103032361
XM_022674809.1 mRNA upstream 11581 18029655 ~ 18082462 (+) True LOC103032361
XM_022674812.1 mRNA upstream 16464 18009302 ~ 18077579 (+) False LOC103032361
XM_022674811.1 mRNA upstream 16464 18029655 ~ 18077579 (+) False LOC103032361
XM_007228686.3 mRNA upstream 87532 17998315 ~ 18006511 (+) True gemin8
XM_022674813.1 mRNA downstream 97542 18192698 ~ 18214872 (+) True LOC103032036
XM_022674388.1 mRNA downstream 240989 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 309350 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 309351 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 383923 18479079 ~ 18566714 (+) False arhgap6
TU140760 other upstream 966733 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1200320 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1586266 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1635834 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3401844 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 823904 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2894117 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2923882 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3232036 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4714923 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile