RNA id: TU141109


Basic Information

Item Value
RNA id TU141109
length 1506
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G104446
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18188710 ~ 18191210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGAGAAGTCATTTGATAACAAAGGTTTTATTACAACATTTGTTTTCCATTACTGATAATGGTTTGTGGCAAAACAACATGGTTGCTGAGTTTGTacaaaacccaagaaaaaaaaacaaaaaaacaatttgatCTACAGCTGAAAGCGACCACATGGAATTTTCATTTCGAGAAATGATAGCTTCCATACAATAAGACAACCGAGAGGGTGCAACACAAAAAGCTACCCCAGAAAACCACACAATCGATTTCAAAAAGACCCTCACATTCCTTAAGGAGTGTTTCCCCGATCTAGTTTGGtcccaccttttttttttttcttcctctctcatctcttcctcttttgtctcaataaaaaaaagcatttgccTGAAGCAGCGCTAACAAGTAGGTGTTAATCATTTCATCGACGACATAGAAAAACCAAATATTGTGCATCCTAAAAAtcaaatttctttaaaaataaaaagacagaaaaaaagaaaacgcaaCACCTTGAATTGGTGAGCTGGTCACACGTCGACATAAAGCCACGCCTTGATTGGTTGAAAATTTTGGAAATGTCCACATTCCAAGGCCACACCCCCCCTTGTCCTTTGCCCCTTTTTTTTGGTTCTCCACGCCAATAGTGGCGGAGGCCGATGTGGAGGTGGCCCGCCTGCCCACCATGGACACTAGATGGATCCAAACTATGTGCTCCGAAGCATTTCCTTTCGTTGGGTTGGAAAAGAGGGGGGgtcgttctttctttcttctggcGGTTGGCGGAAGGAGATTTCATTTCAGTTCCATCCAACACTGATGGCAGCTTTAGgtttgctctctttcttttttaaaacacatttttttcctcttttttgacATTTCGGTTACAAAGTTATACAGCTAAAAGAAGAGAATGAAAAGAAGGCAATGCAGGGAAAGGGGGGTGTGCACAGTGCATGATGGCGGTTTGTGGGGGGCTTCATGATGACGCTTGCTTCTCCTGTTCGATGGCTgcgaaaaaaagaagaaaaaaagaataagacgAAGAAGAACAATTAGATTAGATCCGTGGCTTCTGCCCACATTGTGTGGTCTGCATAACTTAATAAGTTATAATACTGATATAAGTCCAGCATGAGGCCTTCTTTTGGCTTTACTTTTAGATTTTACTAGGATTATGTAATAACCTACAAGTAGTCTAAGATAGAAGTGTATCAGGCCTTACTTTCTTTAGACGGCAGTGGGTTCTTCTCCTGGGTCTCGGTCTTCTTCAGCTTGCTCTTGTCGAAGCTGGTGACCTCATCCAGGTTTGGCTTGTCAGACATGATTGTTGAGTGTCTAGTAGACAGGTTAGCGTTGATAATCTCCGTCAGGTTTCGGCTGCAGCACTGTGGCGCGCCAATGCGCAAGCGCGGCATATATACAGCGCTGTATGCAAATCGACCCGTGACGTCAGGCCCTCAGTCCCCCCCCTCCATCCTCAGCCTCACCGCTCTCAGAGTTCAGATTATTAAAGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141113 lncRNA upstream 17952 18170546 ~ 18170758 (+) True G104448
TU141105 lncRNA upstream 93554 18094043 ~ 18095156 (+) True G104445
TU141021 lncRNA upstream 196261 17924950 ~ 17992449 (+) True G104383
TU141147 lncRNA downstream 23886 18215096 ~ 18215471 (+) True G104474
TU141155 lncRNA downstream 24396 18215606 ~ 18216090 (+) True G104478
TU141160 lncRNA downstream 54425 18245635 ~ 18246339 (+) True G104482
TU141161 lncRNA downstream 66387 18257597 ~ 18269488 (+) True G104483
TU141162 lncRNA downstream 66387 18257597 ~ 18279808 (+) False G104483
XM_022674810.1 mRNA upstream 106248 18009302 ~ 18082462 (+) False LOC103032361
XM_022674809.1 mRNA upstream 106248 18029655 ~ 18082462 (+) True LOC103032361
XM_022674812.1 mRNA upstream 111131 18009302 ~ 18077579 (+) False LOC103032361
XM_022674811.1 mRNA upstream 111131 18029655 ~ 18077579 (+) False LOC103032361
XM_007228687.3 mRNA upstream 182199 17998315 ~ 18006511 (+) False gemin8
XM_022674813.1 mRNA downstream 1488 18192698 ~ 18214872 (+) True LOC103032036
XM_022674388.1 mRNA downstream 144935 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 213296 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 213297 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 287869 18479079 ~ 18566714 (+) False arhgap6
TU140760 other upstream 1061400 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1294987 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1680933 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1730501 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3496511 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 727850 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2798063 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2827828 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3135982 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4618869 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile