RNA id: TU141113


Basic Information

Item Value
RNA id TU141113
length 213
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G104448
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18170546 ~ 18170758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgtttttattttttctgttcattttagggtgggcttgctagcgcgagcgctttacacaagaactaacggaccacgagtgccgcgcgctcggcacaacaactcccgctgtacaacagcgcttataaataaattaaacacaaaaatgagggtattctatcagtaatttcagttcgttttagttagttttataaacacaaaatacagttcgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141105 lncRNA upstream 75390 18094043 ~ 18095156 (+) True G104445
TU141021 lncRNA upstream 178097 17924950 ~ 17992449 (+) True G104383
TU141032 lncRNA upstream 178399 17970934 ~ 17992147 (+) True G104392
TU141037 lncRNA upstream 187742 17977296 ~ 17982804 (+) True G104396
TU141012 lncRNA upstream 205071 17896669 ~ 17965475 (+) False G104374
TU141106 lncRNA downstream 17952 18188710 ~ 18191210 (+) True G104446
TU141107 lncRNA downstream 17952 18188710 ~ 18191210 (+) False G104446
TU141109 lncRNA downstream 17952 18188710 ~ 18191210 (+) False G104446
TU141111 lncRNA downstream 17952 18188710 ~ 18191210 (+) False G104446
TU141147 lncRNA downstream 44338 18215096 ~ 18215471 (+) True G104474
XM_022674810.1 mRNA upstream 88084 18009302 ~ 18082462 (+) False LOC103032361
XM_022674809.1 mRNA upstream 88084 18029655 ~ 18082462 (+) True LOC103032361
XM_022674812.1 mRNA upstream 92967 18009302 ~ 18077579 (+) False LOC103032361
XM_022674811.1 mRNA upstream 92967 18029655 ~ 18077579 (+) False LOC103032361
XM_007228687.3 mRNA upstream 164035 17998315 ~ 18006511 (+) False gemin8
XM_022674813.1 mRNA downstream 21940 18192698 ~ 18214872 (+) True LOC103032036
XM_022674388.1 mRNA downstream 165387 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 233748 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 233749 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 308321 18479079 ~ 18566714 (+) False arhgap6
TU140760 other upstream 1043236 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1276823 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1662769 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1712337 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3478347 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 748302 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2818515 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2848280 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3156434 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4639321 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile